Merge remote-tracking branch 'upstream/main' into fix-8372

* upstream/main: (185 commits)
  Snapcraft and issue template
  Show development information\n\n+semver: minor
  Release v5.7
  New Crowdin updates (#9030)
  New Crowdin updates (#9029)
  [Bot] Update CSL styles (#9027)
  Add missing translations for AutomaticFieldEditor (#9028)
  [Bot] Update Journal abbrev list (#9026)
  Rating in main table (#9023)
  New Crowdin updates (#9024)
  New Crowdin updates (#9016)
  New Crowdin updates (#9013)
  try to gather more output from LO exception (#9002)
  Improve Automatic Field Editor Dialog (#8973)
  Update BST VM to Antlr4 (#8934)
  Support biblatex apa citation for legal entry types (#8966)
  Bump junit-jupiter from 5.8.2 to 5.9.0 (#9012)
  Bump lucene-core from 9.2.0 to 9.3.0 (#9009)
  Bump checkstyle from 10.3.1 to 10.3.2 (#9006)
  Bump appleboy/ssh-action from 0.1.4 to 0.1.5 (#9005)
  ...

.github/ISSUE_TEMPLATE/bug_report.yml

@@ -12,7 +12,7 @@ body:
     attributes:
       label: JabRef version
       options:
-        - "5.5 (latest release)"
+        - "5.7 (latest release)"
         - "3.8.2"
         - Latest development branch build (please note build date below)
         - Other (please describe below)

.github/workflows/automerge.yml

@@ -9,7 +9,7 @@ jobs:
     steps:
       - name: 'Wait for status checks'
         id: waitforstatuschecks
-        uses: "WyriHaximus/github-action-wait-for-status@v1.5"
+        uses: "WyriHaximus/github-action-wait-for-status@v1.6"
         with:
           ignoreActions: Automerge Dependabot,Code coverage,Create snapcraft image,Deploy binaries on builds.jabref.org,codecov/project,markdown-link-check
           checkInterval: 13
@@ -21,7 +21,7 @@ jobs:
         with:
           github-token: "${{ secrets.GITHUB_TOKEN }}"
       - name: Merge pull requests
-        uses: pascalgn/[email protected].2
+        uses: pascalgn/[email protected].3
         if: steps.waitforstatuschecks.outputs.status == 'success'
         env:
           MERGE_METHOD: "merge"

.github/workflows/cleanup_pr.yml

@@ -27,7 +27,7 @@ jobs:
           echo "##[set-output name=branch;]$(echo ${{ github.event.pull_request.head.ref }})"
       - name: Delete folder on builds.jabref.org
         if: ${{ steps.checksecrets.outputs.secretspresent }}
-        uses: appleboy/[email protected].4
+        uses: appleboy/[email protected].5
         with:
           script: rm -rf /var/www/builds.jabref.org/www/${{ steps.extract_branch.outputs.branch }} || true
           host: build-upload.jabref.org

.github/workflows/deployment.yml

@@ -22,6 +22,7 @@ env:
   SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
   AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey }}
   IEEEAPIKey: ${{ secrets.IEEEAPIKey }}
+  BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey}}
   OSXCERT: ${{ secrets.OSX_SIGNING_CERT }}
   GRADLE_OPTS: -Xmx4g -Dorg.gradle.daemon=false -Dorg.gradle.vfs.watch=false
   JAVA_OPTS: -Xmx4g
@@ -64,7 +65,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Setup OSX key chain on OSX

.github/workflows/refresh-csl-subtrees.yml

@@ -6,6 +6,9 @@ on:
     - cron: '1 2 1,15 * *'
   workflow_dispatch:
 
+permissions:
+  contents: read
+
 jobs:
   publish:
     name: Refresh Citation Style Language Files

.github/workflows/refresh-journal-lists.yml

@@ -4,8 +4,14 @@ on:
   workflow_dispatch:
     # Allow to run manually
 
+permissions:
+  contents: read
+
 jobs:
   publish:
+    permissions:
+      contents: write  # for peter-evans/create-pull-request to create branch
+      pull-requests: write  # for peter-evans/create-pull-request to create a PR
     name: Refresh Journal List Files
     runs-on: ubuntu-latest
     steps:
@@ -18,7 +24,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Update journal lists

.github/workflows/tests-fetchers.yml

@@ -26,11 +26,15 @@ env:
   SpringerNatureAPIKey: ${{ secrets.SPRINGERNATUREAPIKEY_FOR_TESTS }}
   AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey_FOR_TESTS }}
   IEEEAPIKey: ${{ secrets.IEEEAPIKey_FOR_TESTS }}
+  BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey_FOR_TESTS}}
 
 concurrency:
   group: fetcher-tests-${{ github.head_ref }}
   cancel-in-progress: true
 
+permissions:
+  contents: read
+
 jobs:
   fetchertests:
     name: Fetcher tests
@@ -41,7 +45,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Run fetcher tests

.github/workflows/tests.yml

@@ -13,6 +13,7 @@ env:
   SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
   AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey }}
   IEEEAPIKey: ${{ secrets.IEEEAPIKey }}
+  BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey}}
   GRADLE_OPTS: -Xmx4g
   JAVA_OPTS: -Xmx4g
 
@@ -30,15 +31,16 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Run check style reporter
         uses: nikitasavinov/checkstyle-action@master
         with:
-          reporter: github-pr-check
+          reporter: github-pr-review
+          github_token: ${{ secrets.GITHUB_TOKEN }}
           checkstyle_config: 'config/checkstyle/checkstyle_reviewdog.xml'
-          checkstyle_version: '10.1'
+          checkstyle_version: '10.3'
       - name: Run checkstyle gradle
         run: ./gradlew checkstyleMain checkstyleTest checkstyleJmh
       - name: Run markdown-lint
@@ -55,7 +57,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Run tests
@@ -87,7 +89,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Run tests on PostgreSQL
@@ -121,7 +123,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Run GUI tests
@@ -159,7 +161,7 @@ jobs:
       - name: Set up JDK
         uses: actions/setup-java@v3
         with:
-          java-version: 17
+          java-version: 18
           distribution: 'temurin'
           cache: 'gradle'
       - name: Update test coverage metrics

.gitpod.Dockerfile

@@ -0,0 +1,8 @@
+# See https://www.gitpod.io/docs/java-in-gitpod/ for a full documentation of Java in GitPod
+
+FROM gitpod/workspace-full
+
+# All available versions can be listed using sdk ls java
+# More information about SDKMAN available at https://github.com/sdkman/sdkman-cli#sdkman-cli
+RUN bash -c ". /home/gitpod/.sdkman/bin/sdkman-init.sh \
+             && sdk install java 18.0.1.1-open"

.gitpod.yml

@@ -0,0 +1,16 @@
+image:
+  file: .gitpod.Dockerfile
+tasks:
+  - init: ./gradlew assemble
+jetbrains:
+  intellij:
+    plugins:
+      - CheckStyle-IDEA
+      - zielu.gittoolbox
+vscode:
+  extensions:
+    - redhat.java
+    - richardwillis.vscode-gradle
+    - vscjava.vscode-java-debug
+    - kiteco.kite
+    - DavidAnson.vscode-markdownlint