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Fix duplicate check/merge entries dialog not triggered on import from… (
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#10914)

* Fix duplicate check/merge entries dialog not triggered on import from browser


Refs #5858

* changelog

* remove double duplicate check

* remove l10n

* add icon, downloading is also handled in import entries

* changelog

* fix l10n

* Update JabRef_en.properties

* Update ImportEntriesDialog.java

---------

Co-authored-by: Oliver Kopp <[email protected]>
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2 people authored and jeanprbt committed Feb 27, 2024
1 parent 00eed62 commit 7119c20
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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,7 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
- We changed the arrangement of the lists in the "Citation relations" tab. `Cites` are now on the left and `Cited by` on the right [#10572](https://github.com/JabRef/jabref/pull/10752)
- Sub libraries based on `aux` file can now also be generated if some citations are not found library. [#10775](https://github.com/JabRef/jabref/pull/10775)
- We rearranged the tab order in the entry editor and renamed the "Scite Tab" to "Citation information". [#10821](https://github.com/JabRef/jabref/issues/10821)
- We changed the duplicate handling in the Import entries dialog. Potential duplicate entries are marked with an icon and importing will now trigger the merge dialog [#10914](https://github.com/JabRef/jabref/pull/10914)
- We made the command "Push to TexShop" more robust to allow cite commands with a character before the first slash. [forum#2699](https://discourse.jabref.org/t/push-to-texshop-mac/2699/17?u=siedlerchr)
- We only show the notification "Saving library..." if the library contains more than 2000 entries. [#9803](https://github.com/JabRef/jabref/issues/9803)
- We enhanced the dialog for adding new fields in the content selector with a selection box containing a list of standard fields. [#10912](https://github.com/JabRef/jabref/pull/10912)
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Original file line number Diff line number Diff line change
Expand Up @@ -158,10 +158,10 @@ private void initialize() {

BackgroundTask.wrap(() -> viewModel.hasDuplicate(entry)).onSuccess(duplicateFound -> {
if (duplicateFound) {
Button duplicateButton = IconTheme.JabRefIcons.DUPLICATE.asButton();
duplicateButton.setTooltip(new Tooltip(Localization.lang("Possible duplicate of existing entry. Click to resolve.")));
duplicateButton.setOnAction(event -> viewModel.resolveDuplicate(entry));
container.getChildren().add(1, duplicateButton);
Node icon = IconTheme.JabRefIcons.ERROR.getGraphicNode();
Tooltip tooltip = new Tooltip(Localization.lang("Possible duplicate of existing entry. Will be resolved on import."));
Tooltip.install(icon, tooltip);
container.getChildren().add(icon);
}
}).executeWith(taskExecutor);

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104 changes: 2 additions & 102 deletions src/main/java/org/jabref/gui/importer/ImportEntriesViewModel.java
Original file line number Diff line number Diff line change
Expand Up @@ -17,9 +17,7 @@
import org.jabref.gui.AbstractViewModel;
import org.jabref.gui.DialogService;
import org.jabref.gui.StateManager;
import org.jabref.gui.duplicationFinder.DuplicateResolverDialog;
import org.jabref.gui.externalfiles.ImportHandler;
import org.jabref.gui.fieldeditors.LinkedFileViewModel;
import org.jabref.gui.util.BackgroundTask;
import org.jabref.gui.util.TaskExecutor;
import org.jabref.logic.bibtex.BibEntryWriter;
Expand All @@ -33,7 +31,6 @@
import org.jabref.model.database.BibDatabaseContext;
import org.jabref.model.entry.BibEntry;
import org.jabref.model.entry.BibEntryTypesManager;
import org.jabref.model.entry.LinkedFile;
import org.jabref.model.util.FileUpdateMonitor;
import org.jabref.preferences.PreferencesService;

Expand Down Expand Up @@ -142,48 +139,9 @@ public String getSourceString(BibEntry entry) {
* @param entriesToImport subset of the entries contained in parserResult
*/
public void importEntries(List<BibEntry> entriesToImport, boolean shouldDownloadFiles) {
// Check if we are supposed to warn about duplicates.
// If so, then see if there are duplicates, and warn if yes.
if (preferences.getImporterPreferences().shouldWarnAboutDuplicatesOnImport()) {
BackgroundTask.wrap(() -> entriesToImport.stream()
.anyMatch(this::hasDuplicate)).onSuccess(duplicateFound -> {
if (duplicateFound) {
boolean continueImport = dialogService.showConfirmationDialogWithOptOutAndWait(Localization.lang("Duplicates found"),
Localization.lang("There are possible duplicates that haven't been resolved. Continue?"),
Localization.lang("Continue with import"),
Localization.lang("Cancel import"),
Localization.lang("Do not ask again"),
optOut -> preferences.getImporterPreferences().setWarnAboutDuplicatesOnImport(!optOut));

if (!continueImport) {
dialogService.notify(Localization.lang("Import canceled"));
} else {
buildImportHandlerThenImportEntries(entriesToImport);
}
} else {
buildImportHandlerThenImportEntries(entriesToImport);
}
}).executeWith(taskExecutor);
} else {
buildImportHandlerThenImportEntries(entriesToImport);
}

// Remember the selection in the dialog
preferences.getFilePreferences().setDownloadLinkedFiles(shouldDownloadFiles);

if (shouldDownloadFiles) {
for (BibEntry bibEntry : entriesToImport) {
bibEntry.getFiles().stream().filter(LinkedFile::isOnlineLink).forEach(linkedFile ->
new LinkedFileViewModel(
linkedFile,
bibEntry,
databaseContext,
taskExecutor,
dialogService,
preferences).download());
}
}

new DatabaseMerger(preferences.getBibEntryPreferences().getKeywordSeparator()).mergeStrings(
databaseContext.getDatabase(),
parserResult.getDatabase());
Expand All @@ -193,7 +151,7 @@ public void importEntries(List<BibEntry> entriesToImport, boolean shouldDownload
parserResult.getPath().map(path -> path.getFileName().toString()).orElse("unknown"),
parserResult.getDatabase().getEntries());

// JabRefGUI.getMainFrame().getCurrentLibraryTab().markBaseChanged();
buildImportHandlerThenImportEntries(entriesToImport);
}

private void buildImportHandlerThenImportEntries(List<BibEntry> entriesToImport) {
Expand All @@ -205,8 +163,7 @@ private void buildImportHandlerThenImportEntries(List<BibEntry> entriesToImport)
stateManager,
dialogService,
taskExecutor);
importHandler.importEntries(entriesToImport);
dialogService.notify(Localization.lang("Number of entries successfully imported") + ": " + entriesToImport.size());
importHandler.importEntriesWithDuplicateCheck(selectedDb.getValue(), entriesToImport);
}

/**
Expand All @@ -226,61 +183,4 @@ private Optional<BibEntry> findInternalDuplicate(BibEntry entry) {
}
return Optional.empty();
}

public void resolveDuplicate(BibEntry entry) {
// First, try to find duplicate in the existing library
Optional<BibEntry> other = new DuplicateCheck(entryTypesManager).containsDuplicate(databaseContext.getDatabase(), entry, databaseContext.getMode());
if (other.isPresent()) {
DuplicateResolverDialog dialog = new DuplicateResolverDialog(other.get(),
entry, DuplicateResolverDialog.DuplicateResolverType.IMPORT_CHECK, databaseContext, stateManager, dialogService, preferences);

DuplicateResolverDialog.DuplicateResolverResult result = dialogService.showCustomDialogAndWait(dialog)
.orElse(DuplicateResolverDialog.DuplicateResolverResult.BREAK);

if (result == DuplicateResolverDialog.DuplicateResolverResult.KEEP_LEFT) {
// TODO: Remove old entry. Or... add it to a list of entries
// to be deleted. We only delete
// it after Ok is clicked.
// entriesToDelete.add(other.get());
} else if (result == DuplicateResolverDialog.DuplicateResolverResult.KEEP_RIGHT) {
// Remove the entry from the import inspection dialog.
entries.remove(entry);
} else if (result == DuplicateResolverDialog.DuplicateResolverResult.KEEP_BOTH) {
// Do nothing.
} else if (result == DuplicateResolverDialog.DuplicateResolverResult.KEEP_MERGE) {
// TODO: Remove old entry. Or... add it to a list of entries
// to be deleted. We only delete
// it after Ok is clicked.
// entriesToDelete.add(other.get());

// Replace entry by merged entry
entries.add(dialog.getMergedEntry());
entries.remove(entry);
}
return;
}
// Second, check if the duplicate is of another entry in the import:
other = findInternalDuplicate(entry);
if (other.isPresent()) {
DuplicateResolverDialog diag = new DuplicateResolverDialog(entry,
other.get(), DuplicateResolverDialog.DuplicateResolverType.DUPLICATE_SEARCH, databaseContext, stateManager, dialogService, preferences);

DuplicateResolverDialog.DuplicateResolverResult answer = dialogService.showCustomDialogAndWait(diag)
.orElse(DuplicateResolverDialog.DuplicateResolverResult.BREAK);
if (answer == DuplicateResolverDialog.DuplicateResolverResult.KEEP_LEFT) {
// Remove other entry
entries.remove(other.get());
} else if (answer == DuplicateResolverDialog.DuplicateResolverResult.KEEP_RIGHT) {
// Remove entry
entries.remove(entry);
} else if (answer == DuplicateResolverDialog.DuplicateResolverResult.KEEP_BOTH) {
// Do nothing
} else if (answer == DuplicateResolverDialog.DuplicateResolverResult.KEEP_MERGE) {
// Replace both entries by merged entry
entries.add(diag.getMergedEntry());
entries.remove(entry);
entries.remove(other.get());
}
}
}
}
10 changes: 4 additions & 6 deletions src/main/resources/l10n/JabRef_en.properties
Original file line number Diff line number Diff line change
Expand Up @@ -633,7 +633,10 @@ Please\ restart\ JabRef\ for\ preferences\ to\ take\ effect.=Please restart JabR

Possible\ duplicate\ entries=Possible duplicate entries

Possible\ duplicate\ of\ existing\ entry.\ Click\ to\ resolve.=Possible duplicate of existing entry. Click to resolve.
Possible\ duplicate\ of\ existing\ entry.\ Will\ be\ resolved\ on\ import.=Possible duplicate of existing entry. Will be resolved on import.

Import\ canceled=Import canceled


Preferences=Preferences

Expand Down Expand Up @@ -894,8 +897,6 @@ The\ label\ of\ the\ string\ cannot\ contain\ the\ '\#'\ character.=The label of

The\ output\ option\ depends\ on\ a\ valid\ import\ option.=The output option depends on a valid import option.

There\ are\ possible\ duplicates\ that\ haven't\ been\ resolved.\ Continue?=There are possible duplicates that haven't been resolved. Continue?

This\ operation\ requires\ all\ selected\ entries\ to\ have\ citation\ keys\ defined.=This operation requires all selected entries to have citation keys defined.

This\ operation\ requires\ one\ or\ more\ entries\ to\ be\ selected.=This operation requires one or more entries to be selected.
Expand Down Expand Up @@ -1968,9 +1969,6 @@ Export\ format\ name\:=Export format name\:
Cleared\ connection\ settings=Cleared connection settings
Error\ adding\ discovered\ CitationStyles=Error adding discovered CitationStyles
(more)=(more)
Cancel\ import=Cancel import
Continue\ with\ import=Continue with import
Import\ canceled=Import canceled
Select\ all\ new\ entries=Select all new entries
Select\ all\ entries=Select all entries
Total\ items\ found\:=Total items found:
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