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Added a test document to explore setup of github actions testing
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3benknight authored Jul 25, 2024
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name: "Xanthos Tests"

on:
push:
branches:
- '**'
pull_request:
branches:
- '**'

jobs:
tests:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.7, 3.8, 3.9, 3.10, 3.11]

steps:
- name: Checkout repository
uses: actions/checkout@v4

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}

- name: Upgrade pip
run: python -m pip install --upgrade pip

- name: Install Xanthos
run: pip install git+https://github.com/JGCRI/xanthos@dev-testing

- name: Install test dependencies
run: pip install pytest pytest-cov

- name: Run tests
run: pytest --cov=xanthos --cov-report=xml

- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
fail_ci_if_error: true

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