update

JEFworks-Lab · May 15, 2024 · 356aa8b · 356aa8b
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commit 356aa8b
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/data-raw/merfish_mousePOA.R b/data-raw/merfish_mousePOA.R
@@ -5,7 +5,6 @@ library(SpatialExperiment)
 library(Matrix)
 library(ggplot2)
 library(gridExtra)
-library(here)
 
 data <- read.csv('~/Downloads/Moffitt_and_Bambah-Mukku_et_al_merfish_all_cells.csv')
 
@@ -17,7 +16,7 @@ data_sub <- data[(data$Animal_ID == animal & data$Animal_sex == sex & data$Behav
 dim(data_sub)
 
 ## save subsetted data for vignettes
-saveRDS(data_sub, file = here("vignettes/merfish_mousePOA_raw.RDS"))
+saveRDS(data_sub, file = "vignettes/merfish_mousePOA_raw.RDS")
 
 ## genes-by-cells matrix
 # extract the genes-by-cells matrix as a sparse matrix (dgCMatrix)

diff --git a/vignettes/formatting-SpatialExperiment-for-SEraster.Rmd b/vignettes/formatting-SpatialExperiment-for-SEraster.Rmd
@@ -27,13 +27,12 @@ In the original work, [Moffitt J. and Bambah-Mukku D. et al. (2018), "Molecular,
 library(SpatialExperiment)
 library(Matrix)
 library(ggplot2)
-library(here)
 ```
 
 ## Load the subsetted dataset
 
 ```{r}
-data_sub <- readRDS(file = here("vignettes/merfish_mousePOA_raw.RDS"))
+data_sub <- readRDS(file = "merfish_mousePOA_raw.RDS")
 dim(data_sub)
 ```