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@JCVenterInstitute

J. Craig Venter Institute

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  1. NSForest NSForest Public

    A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

    HTML 54 20

  2. FRmatch FRmatch Public

    Cell type matching in single-cell RNA-sequencing data using FR-Match

    R 19 2

  3. VIGOR4 VIGOR4 Public

    VIGOR4

    Java 17 11

  4. PanGenomePipeline PanGenomePipeline Public

    PanGenomePipeline

    Perl 15 9

  5. OMeta-Public OMeta-Public Public

    OMeta-Public

    JavaScript 8 9

  6. PanACEA PanACEA Public

    PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.

    Perl 7 4

Repositories

Showing 10 of 30 repositories
  • CAMRA Public

    CAMRA is a DS-I Africa research hub focused on analyzing clinical and molecular data related to antimicrobial resistance (AMR) in bacterial infections in Nigeria and Rwanda with the aim of translating genomics of AMR to sensitive, rapid diagnostics, and effective therapeutics.

    JCVenterInstitute/CAMRA’s past year of commit activity
    WDL 0 0 0 0 Updated Nov 14, 2024
  • HSPW-V3 Public
    JCVenterInstitute/HSPW-V3’s past year of commit activity
    JavaScript 0 1 5 0 Updated Nov 14, 2024
  • FRmatch Public

    Cell type matching in single-cell RNA-sequencing data using FR-Match

    JCVenterInstitute/FRmatch’s past year of commit activity
    R 19 MIT 2 0 0 Updated Oct 9, 2024
  • NSForest Public

    A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

    JCVenterInstitute/NSForest’s past year of commit activity
    HTML 54 MIT 20 4 0 Updated Oct 7, 2024
  • Jillion Public

    Jillion

    JCVenterInstitute/Jillion’s past year of commit activity
    Java 2 LGPL-2.1 4 0 0 Updated Aug 8, 2024
  • DAFi-gating Public
    JCVenterInstitute/DAFi-gating’s past year of commit activity
    HTML 6 MIT 2 0 0 Updated Jun 24, 2024
  • celligrate Public

    Software suite for marker gene identification and cell type integration from single cell RNA-sequencing data

    JCVenterInstitute/celligrate’s past year of commit activity
    HTML 3 MIT 0 1 0 Updated Jun 7, 2024
  • PanGenomePipeline Public

    PanGenomePipeline

    JCVenterInstitute/PanGenomePipeline’s past year of commit activity
    Perl 15 GPL-2.0 9 7 0 Updated Apr 10, 2024
  • PanACEA Public

    PanACEA is a suite of PERL scripts that allows for visualization of prokaryotic pan-chromosomes, including core and variable regions.

    JCVenterInstitute/PanACEA’s past year of commit activity
    Perl 7 GPL-2.0 4 1 0 Updated Mar 20, 2024
  • GGRaSP Public
    JCVenterInstitute/GGRaSP’s past year of commit activity
    R 7 GPL-2.0 4 1 0 Updated Feb 15, 2024
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