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Updated output to use ERCC92 instead of ERCC.
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This will need to be updated if ERCC references update but will serve to track the ERCC number.
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Jonathan Oribello committed Apr 30, 2022
1 parent c8cfc1a commit c51bf37
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions modules/genome.nf
Original file line number Diff line number Diff line change
Expand Up @@ -241,16 +241,16 @@ process CONCAT_ERCC {
val(has_ercc)

output:
tuple path("${ genome_fasta.baseName }_and_ERCC.fa"), \
path("${ genome_gtf.baseName }_and_ERCC.gtf")
tuple path("${ genome_fasta.baseName }_and_ERCC92.fa"), \
path("${ genome_gtf.baseName }_and_ERCC92.gtf")

when:
has_ercc

script:
"""
cat ${genome_fasta} ${ercc_fasta} > ${ genome_fasta.baseName }_and_ERCC.fa
cat ${genome_gtf} ${ercc_gtf} > ${ genome_gtf.baseName }_and_ERCC.gtf
cat ${genome_fasta} ${ercc_fasta} > ${ genome_fasta.baseName }_and_ERCC92.fa
cat ${genome_gtf} ${ercc_gtf} > ${ genome_gtf.baseName }_and_ERCC92.gtf
"""
}

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