WIP: notebook fixups and docstrings

InsightSoftwareConsortium · Nov 10, 2023 · 8a0e96a · 8a0e96a
1 parent 989d438
commit 8a0e96a
Show file tree

Hide file tree

Showing 5 changed files with 70 additions and 54 deletions.
diff --git a/examples/LightsheetRegistration.ipynb b/examples/LightsheetRegistration.ipynb
@@ -78,7 +78,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "\u001b[2000D\u001b[KLoading ITKPyBase... \u001b[2000D\u001b[KLoading ITKPyBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKCommon... \u001b[2000D\u001b[KLoading ITKCommon... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKStatistics... \u001b[2000D\u001b[KLoading ITKStatistics... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageFilterBase... \u001b[2000D\u001b[KLoading ITKImageFilterBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKTransform... \u001b[2000D\u001b[KLoading ITKTransform... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOImageBase... \u001b[2000D\u001b[KLoading ITKIOHDF5... \u001b[2000D\u001b[KLoading ITKIOHDF5... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading IOOMEZarrNGFF... \u001b[2000D\u001b[KLoading IOOMEZarrNGFF... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOBMP... \u001b[2000D\u001b[KLoading ITKIOBMP... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOBioRad... \u001b[2000D\u001b[KLoading ITKIOBioRad... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOBruker... \u001b[2000D\u001b[KLoading ITKIOBruker... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOGDCM... \u001b[2000D\u001b[KLoading ITKIOGDCM... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOIPL... \u001b[2000D\u001b[KLoading ITKIOIPL... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOGE... \u001b[2000D\u001b[KLoading ITKIOGE... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOGIPL... \u001b[2000D\u001b[KLoading ITKIOGIPL... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOJPEG... \u001b[2000D\u001b[KLoading ITKIOJPEG... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOJPEG2000... \u001b[2000D\u001b[KLoading ITKIOJPEG2000... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOTIFF... \u001b[2000D\u001b[KLoading ITKIOTIFF... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOLSM... \u001b[2000D\u001b[KLoading ITKIOLSM... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMINC... \u001b[2000D\u001b[KLoading ITKIOMINC... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMRC... \u001b[2000D\u001b[KLoading ITKIOMRC... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeta... \u001b[2000D\u001b[KLoading ITKIOMeta... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIONIFTI... \u001b[2000D\u001b[KLoading ITKIONIFTI... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIONRRD... \u001b[2000D\u001b[KLoading ITKIONRRD... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOPNG... \u001b[2000D\u001b[KLoading ITKIOPNG... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOStimulate... \u001b[2000D\u001b[KLoading ITKIOStimulate... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOVTK... \u001b[2000D\u001b[KLoading ITKIOVTK... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOImageBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageSources... \u001b[2000D\u001b[KLoading ITKImageSources... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageFunction... \u001b[2000D\u001b[KLoading ITKImageFunction... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageGrid... \u001b[2000D\u001b[KLoading ITKImageGrid... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKFFT... \u001b[2000D\u001b[KLoading ITKFFT... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKMesh... \u001b[2000D\u001b[KLoading ITKMesh... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKSpatialObjects... \u001b[2000D\u001b[KLoading ITKSpatialObjects... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageCompose... \u001b[2000D\u001b[KLoading ITKImageCompose... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageStatistics... \u001b[2000D\u001b[KLoading ITKImageStatistics... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKPath... \u001b[2000D\u001b[KLoading ITKPath... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageIntensity... \u001b[2000D\u001b[KLoading ITKImageIntensity... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKThresholding... \u001b[2000D\u001b[KLoading ITKThresholding... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKConvolution... \u001b[2000D\u001b[KLoading ITKConvolution... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKSmoothing... \u001b[2000D\u001b[KLoading ITKSmoothing... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKOptimizers... \u001b[2000D\u001b[KLoading ITKOptimizers... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageGradient... \u001b[2000D\u001b[KLoading ITKImageGradient... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageFeature... \u001b[2000D\u001b[KLoading ITKImageFeature... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKFiniteDifference... \u001b[2000D\u001b[KLoading ITKFiniteDifference... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKDisplacementField... \u001b[2000D\u001b[KLoading ITKDisplacementField... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKRegistrationCommon... \u001b[2000D\u001b[KLoading ITKRegistrationCommon... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKVoronoi... \u001b[2000D\u001b[KLoading ITKVoronoi... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKQuadEdgeMesh... \u001b[2000D\u001b[KLoading ITKQuadEdgeMesh... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshBase... \u001b[2000D\u001b[KLoading ITKIOMeshBYU... \u001b[2000D\u001b[KLoading ITKIOMeshBYU... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshFreeSurfer... \u001b[2000D\u001b[KLoading ITKIOMeshFreeSurfer... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshGifti... \u001b[2000D\u001b[KLoading ITKIOMeshGifti... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshOBJ... \u001b[2000D\u001b[KLoading ITKIOMeshOBJ... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshOFF... \u001b[2000D\u001b[KLoading ITKIOMeshOFF... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshVTK... \u001b[2000D\u001b[KLoading ITKIOMeshVTK... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading Elastix... \u001b[2000D\u001b[KLoading Elastix... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKSignedDistanceFunction... \u001b[2000D\u001b[KLoading ITKSignedDistanceFunction... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKCurvatureFlow... \u001b[2000D\u001b[KLoading ITKCurvatureFlow... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKNarrowBand... \u001b[2000D\u001b[KLoading ITKNarrowBand... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageCompare... \u001b[2000D\u001b[KLoading ITKImageCompare... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageLabel... \u001b[2000D\u001b[KLoading ITKImageLabel... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKConnectedComponents... \u001b[2000D\u001b[KLoading ITKConnectedComponents... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKFastMarching... \u001b[2000D\u001b[KLoading ITKFastMarching... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKMathematicalMorphology... \u001b[2000D\u001b[KLoading ITKMathematicalMorphology... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKLabelMap... \u001b[2000D\u001b[KLoading ITKLabelMap... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKBinaryMathematicalMorphology... \u001b[2000D\u001b[KLoading ITKBinaryMathematicalMorphology... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKDistanceMap... \u001b[2000D\u001b[KLoading ITKDistanceMap... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKAnisotropicSmoothing... \u001b[2000D\u001b[KLoading ITKAnisotropicSmoothing... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKLevelSets... \u001b[2000D\u001b[KLoading ITKLevelSets... \u001b[2000D\u001b[K"
+      "\u001b[2000D\u001b[KLoading ITKPyBase... \u001b[2000D\u001b[KLoading ITKPyBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKCommon... \u001b[2000D\u001b[KLoading ITKCommon... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKStatistics... \u001b[2000D\u001b[KLoading ITKStatistics... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageFilterBase... \u001b[2000D\u001b[KLoading ITKImageFilterBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKTransform... \u001b[2000D\u001b[KLoading ITKTransform... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKMesh... \u001b[2000D\u001b[KLoading ITKMesh... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageFunction... \u001b[2000D\u001b[KLoading ITKImageFunction... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKSpatialObjects... \u001b[2000D\u001b[KLoading ITKSpatialObjects... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageCompose... \u001b[2000D\u001b[KLoading ITKImageCompose... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageStatistics... \u001b[2000D\u001b[KLoading ITKImageStatistics... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKPath... \u001b[2000D\u001b[KLoading ITKPath... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageGrid... \u001b[2000D\u001b[KLoading ITKImageGrid... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageIntensity... \u001b[2000D\u001b[KLoading ITKImageIntensity... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKThresholding... \u001b[2000D\u001b[KLoading ITKThresholding... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKSignedDistanceFunction... \u001b[2000D\u001b[KLoading ITKSignedDistanceFunction... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKOptimizers... \u001b[2000D\u001b[KLoading ITKOptimizers... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKFiniteDifference... \u001b[2000D\u001b[KLoading ITKFiniteDifference... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKCurvatureFlow... \u001b[2000D\u001b[KLoading ITKCurvatureFlow... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKNarrowBand... \u001b[2000D\u001b[KLoading ITKNarrowBand... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageSources... \u001b[2000D\u001b[KLoading ITKImageSources... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKFFT... \u001b[2000D\u001b[KLoading ITKFFT... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKConvolution... \u001b[2000D\u001b[KLoading ITKConvolution... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKSmoothing... \u001b[2000D\u001b[KLoading ITKSmoothing... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageGradient... \u001b[2000D\u001b[KLoading ITKImageGradient... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageFeature... \u001b[2000D\u001b[KLoading ITKImageFeature... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageCompare... \u001b[2000D\u001b[KLoading ITKImageCompare... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOImageBase... \u001b[2000D\u001b[KLoading ITKIOHDF5... \u001b[2000D\u001b[KLoading ITKIOHDF5... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading IOOMEZarrNGFF... \u001b[2000D\u001b[KLoading IOOMEZarrNGFF... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOBMP... \u001b[2000D\u001b[KLoading ITKIOBMP... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOBioRad... \u001b[2000D\u001b[KLoading ITKIOBioRad... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOBruker... \u001b[2000D\u001b[KLoading ITKIOBruker... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOGDCM... \u001b[2000D\u001b[KLoading ITKIOGDCM... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOIPL... \u001b[2000D\u001b[KLoading ITKIOIPL... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOGE... \u001b[2000D\u001b[KLoading ITKIOGE... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOGIPL... \u001b[2000D\u001b[KLoading ITKIOGIPL... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOJPEG... \u001b[2000D\u001b[KLoading ITKIOJPEG... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOJPEG2000... \u001b[2000D\u001b[KLoading ITKIOJPEG2000... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOTIFF... \u001b[2000D\u001b[KLoading ITKIOTIFF... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOLSM... \u001b[2000D\u001b[KLoading ITKIOLSM... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMINC... \u001b[2000D\u001b[KLoading ITKIOMINC... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMRC... \u001b[2000D\u001b[KLoading ITKIOMRC... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeta... \u001b[2000D\u001b[KLoading ITKIOMeta... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIONIFTI... \u001b[2000D\u001b[KLoading ITKIONIFTI... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIONRRD... \u001b[2000D\u001b[KLoading ITKIONRRD... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOPNG... \u001b[2000D\u001b[KLoading ITKIOPNG... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOStimulate... \u001b[2000D\u001b[KLoading ITKIOStimulate... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOVTK... \u001b[2000D\u001b[KLoading ITKIOVTK... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOImageBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKQuadEdgeMesh... \u001b[2000D\u001b[KLoading ITKQuadEdgeMesh... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKImageLabel... \u001b[2000D\u001b[KLoading ITKImageLabel... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKConnectedComponents... \u001b[2000D\u001b[KLoading ITKConnectedComponents... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKFastMarching... \u001b[2000D\u001b[KLoading ITKFastMarching... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKMathematicalMorphology... \u001b[2000D\u001b[KLoading ITKMathematicalMorphology... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKLabelMap... \u001b[2000D\u001b[KLoading ITKLabelMap... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKBinaryMathematicalMorphology... \u001b[2000D\u001b[KLoading ITKBinaryMathematicalMorphology... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKDistanceMap... \u001b[2000D\u001b[KLoading ITKDistanceMap... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKAnisotropicSmoothing... \u001b[2000D\u001b[KLoading ITKAnisotropicSmoothing... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKLevelSets... \u001b[2000D\u001b[KLoading ITKLevelSets... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKDisplacementField... \u001b[2000D\u001b[KLoading ITKDisplacementField... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKRegistrationCommon... \u001b[2000D\u001b[KLoading ITKRegistrationCommon... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKVoronoi... \u001b[2000D\u001b[KLoading ITKVoronoi... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshBase... \u001b[2000D\u001b[KLoading ITKIOMeshBYU... \u001b[2000D\u001b[KLoading ITKIOMeshBYU... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshFreeSurfer... \u001b[2000D\u001b[KLoading ITKIOMeshFreeSurfer... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshGifti... \u001b[2000D\u001b[KLoading ITKIOMeshGifti... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshOBJ... \u001b[2000D\u001b[KLoading ITKIOMeshOBJ... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshOFF... \u001b[2000D\u001b[KLoading ITKIOMeshOFF... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshVTK... \u001b[2000D\u001b[KLoading ITKIOMeshVTK... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading ITKIOMeshBase... \u001b[2000D\u001b[K\u001b[2000D\u001b[KLoading Elastix... \u001b[2000D\u001b[KLoading Elastix... \u001b[2000D\u001b[K"
      ]
     }
    ],
@@ -134,15 +134,15 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 7,
    "id": "cdf977e4",
    "metadata": {},
    "outputs": [],
    "source": [
     "PIXEL_TYPE = itk.F\n",
     "DIMENSION = 3\n",
     "\n",
-    "FIXED_IMAGE_FILEPATH = f'{INPUT_DIR}/{FIXED_IMAGE_URL.split(\"/\")[-1]}'\n",
+    "FIXED_IMAGE_FILEPATH = os.path.abspath(f'{INPUT_DIR}/{FIXED_IMAGE_URL.split(\"/\")[-1]}')\n",
     "if not os.path.exists(FIXED_IMAGE_FILEPATH):\n",
     "    logger.info(f\"Retrieving from {FIXED_IMAGE_URL} to {FIXED_IMAGE_FILEPATH}\")\n",
     "    urlretrieve(FIXED_IMAGE_URL, FIXED_IMAGE_FILEPATH)\n",

diff --git a/src/itk_dreg/block/dask.py b/src/itk_dreg/block/dask.py
@@ -16,6 +16,15 @@ def rechunk_to_physical_block(
     """
     Rechunk the given array/image so that the physical size of each block
     approximately matches the physical size of chunks in the reference array/image.
+
+    :param array: The Dask array to rechunk.
+    :param array_image: The image or image view to reference to map from
+        physical space to the Dask array voxel space.
+    :param reference_array: The Dask array reference with chunk sizes to match.
+    :param reference_image: The image or image view to reference to map from
+        the reference Dask array voxel space to physical space.
+    :return: The input `dask.array.Array` rechunked to approximately match
+        physical chunk sizes with the reference array.
     """
     # Determine approximate physical size of a reference image chunk
     itk_ref_chunksize = np.flip(reference_array.chunksize)