Merge pull request #34 from thewtex/notebooks #72

	name: "test-notebooks"

	on: [push, pull_request]

	env:
	aind-ccf-alignment-experiments-tag: 756e846d08b07fcffbc3c387216a59a9fa563fd6

	jobs:
	pytest:
	name: "Test Jupyter Notebooks with PyTest"
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: "3.11"
	- name: Update pip
	run: \|
	python -m pip install --upgrade pip

	- name: Setup Graphviz
	uses: ts-graphviz/setup-graphviz@v1

	- name: "Install Dependencies"
	shell: bash
	working-directory: src
	run: \|
	pip install -e '.[notebook,lightsheet,test]'

	- name: "Run Tests"
	shell: bash
	run: \|
	pytest --nbmake --nbmake-timeout=30000 examples/*.ipynb -vvv -s -k "not LightsheetRegistration.ipynb"

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