Use GHA to build presentation (#8)

* use GHA

* fix GHA

.github/CODE_OF_CONDUCT.md

@@ -0,0 +1,126 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, caste, color, religion, or sexual
+identity and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+  and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the overall
+  community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or advances of
+  any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email address,
+  without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at [email protected]. 
+All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series of
+actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or permanent
+ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior, harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within the
+community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.1, available at
+<https://www.contributor-covenant.org/version/2/1/code_of_conduct.html>.
+
+Community Impact Guidelines were inspired by
+[Mozilla's code of conduct enforcement ladder][https://github.com/mozilla/inclusion].
+
+For answers to common questions about this code of conduct, see the FAQ at
+<https://www.contributor-covenant.org/faq>. Translations are available at <https://www.contributor-covenant.org/translations>.
+
+[homepage]: https://www.contributor-covenant.org

.github/dependabot.yaml

@@ -0,0 +1,8 @@
+version: 2
+
+updates:
+  # Keep dependencies for GitHub Actions up-to-date
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/build-presentation.yaml

@@ -0,0 +1,61 @@
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  schedule:
+    # * is a special character in YAML so you have to quote this string
+    # Trigger once a week, on a Sunday (0)
+    - cron: "0 0 * * 0"
+
+name: Build Presentation
+
+jobs:
+  build-presentation:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+        with:
+          pandoc-version: "latest"
+
+      - uses: quarto-dev/quarto-actions/setup@v2
+        with:
+          version: pre-release
+      - run: |
+          quarto --version
+          quarto install extension quarto-ext/fontawesome --no-prompt
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          pak-version: devel
+          upgrade: 'TRUE'
+          extra-packages: |
+            quarto-dev/quarto-r
+            r-lib/sessioninfo
+
+      - name: Render slides
+        run: |
+          options(crayon.enabled = FALSE)
+          quarto::quarto_render("index.qmd")
+        shell: Rscript {0}
+
+      - name: Build PDF using decktape
+        run: |
+          rm -rf slides
+          mkdir slides && sudo chmod 777 slides
+          sudo npm install -g --unsafe-perm=true --allow-root decktape
+          docker run --rm -t -v `pwd`:/slides -v ~:/home/user astefanutti/decktape index.html slides/slides.pdf
+
+      - name: Copy PDF slides to top-level directory
+        run: |
+          cp slides/slides.pdf . && rm -rf slides
+
+      #- uses: stefanzweifel/[email protected]

.github/workflows/codeql-analysis.yaml

@@ -0,0 +1,71 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: ["main"]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: ["main"]
+  schedule:
+    - cron: "30 17 * * 2"
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: ["javascript"]
+        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      # Initializes the CodeQL tools for scanning.
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v3
+        with:
+          languages: ${{ matrix.language }}
+          # If you wish to specify custom queries, you can do so here or in a config file.
+          # By default, queries listed here will override any specified in a config file.
+          # Prefix the list here with "+" to use these queries and those in the config file.
+
+          # Details on CodeQL's query packs refer to : https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+          # queries: security-extended,security-and-quality
+
+      # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
+      # If this step fails, then you should remove it and run the build manually (see below)
+      - name: Autobuild
+        uses: github/codeql-action/autobuild@v3
+
+      # ℹ️ Command-line programs to run using the OS shell.
+      # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+      #   If the Autobuild fails above, remove it and uncomment the following three lines.
+      #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+      # - run: |
+      #   echo "Run, Build Application using script"
+      #   ./location_of_script_within_repo/buildscript.sh
+
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v3

DESCRIPTION

@@ -22,6 +22,7 @@ Depends:
     knitr,
     ggiraphExtra,
     ggstatsplot,
+    ggthemes,
     packageRank,
     quarto,
     reticulate

README.md

@@ -3,7 +3,7 @@
 This is a repository for presentation about the [`{ggstatsplot}`](https://indrajeetpatil.github.io/ggstatsplot/) (prepared using [Quarto](https://quarto.org/)).
 
 The slides are available here:<br>
-<https://indrajeetpatil.github.io/ggstatsplot_slides/slides/ggstatsplot_presentation.html#1>
+<https://indrajeetpatil.github.io/intro-to-ggstatsplot/slides/ggstatsplot_presentation.html#1>
 
 There is also a dedicated website for this package:<br>
 <https://indrajeetpatil.github.io/ggstatsplot/>

index.html

@@ -499,7 +499,7 @@
 </div>
 </div></div>
 </div>
-</section></section><section><section id="problems" class="title-slide slide level1 center"><h1>Problems</h1>
+</section></section><section><section id="negatives" class="title-slide slide level1 center"><h1>Negatives</h1>
 
 </section><section id="golem-of-prague-issue" class="slide level2 smaller"><h2>“Golem of Prague” issue</h2>
 <div class="columns">
@@ -557,6 +557,7 @@ <h3 class="smaller" id="clunky-api">Clunky API</h3>
 </div><div class="column" style="width:50%;">
 <p>Healthy code base:</p>
 <p><a href="https://indrajeetpatil.github.io/refactoring-ggstatsplot/refactoring-ggstatsplot#1"><img data-src="media/refactoring.png"></a></p>
+<p><img data-src="media/ggstats-contributions.png"></p>
 </div></div>
 </section><section id="reception" class="slide level2 smaller"><h2>Reception</h2>
 <div class="columns">
@@ -578,7 +579,7 @@ <h3 class="smaller" id="clunky-api">Clunky API</h3>
 <span id="cb8-5"><a href=""></a>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output-display">
 <div>
-<figure><p><img data-src="index_files/figure-revealjs/unnamed-chunk-4-1.png" width="3000"></p>
+<figure><p><img data-src="index_files/figure-revealjs/cran_downloads-1.png" width="3000"></p>
 </figure>
 </div>
 </div>
@@ -608,7 +609,7 @@ <h3 class="smaller" id="clunky-api">Clunky API</h3>
 </section><section id="exploring-data-made-easy" class="slide level2 smaller"><h2>Exploring data made easy! 😉</h2>
 <p>In summary, the <code>ggstatsplot</code> approach- <br><br> (<em>a</em>) avoids errors in statistical reporting, <br><br> (<em>b</em>) highlights the importance of the effect by providing effect size measures by default, <br><br> (<em>c</em>) provides an easy way to evaluate <em>absence</em> of an effect using Bayesian framework, <br><br> (<em>d</em>) demands to evaluate statistical analysis in the context of the underlying data, <br><br> and is (<em>e</em>) easy and (<em>f</em>) simple enough that somebody with little coding experience can use it without making an error.</p>
 </section></section><section id="for-more" class="title-slide slide level1 center"><h1>For more</h1>
-<p>Source code for these slides can be found <a href="https://github.com/IndrajeetPatil/ggstatsplot_slides" target="_blank">on GitHub</a>.</p>
+<p>Source code for these slides can be found <a href="https://github.com/IndrajeetPatil/intro-to-ggstatsplot" target="_blank">on GitHub</a>.</p>
 <p>If you are interested in good programming and software development practices, check out my other <a href="https://sites.google.com/site/indrajeetspatilmorality/presentations" target="_blank">slide decks</a>.</p>
 </section><section id="find-me-at" class="title-slide slide level1 center"><h1>Find me at…</h1>
 <p><i class="fa-brands fa-twitter" aria-label="twitter"></i> <a href="http://twitter.com/patilindrajeets" target="_blank">Twitter</a></p>
@@ -633,7 +634,7 @@ <h3 class="smaller" id="clunky-api">Clunky API</h3>
  collate  en_US.UTF-8
  ctype    en_US.UTF-8
  tz       Europe/Berlin
- date     2024-11-09
+ date     2024-11-10
  pandoc   3.5 @ /usr/local/bin/ (via rmarkdown)
  quarto   1.6.33 @ /usr/local/bin/quarto