Merge pull request #239 from IndrajeetPatil/cran_submission_11

cran submission 0.0.11
IndrajeetPatil · Jun 14, 2019 · 3b0c78a · 3b0c78a · lintr-bot · Jun 14, 2019
2 parents c4ad596 + 1c4a890
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diff --git a/CONDUCT.md → CODE_OF_CONDUCT.md b/CONDUCT.md → CODE_OF_CONDUCT.md
@@ -21,5 +21,5 @@ Instances of abusive, harassing, or otherwise unacceptable behavior may be repor
 opening an issue or contacting one or more of the project maintainers.
 
 This Code of Conduct is adapted from the Contributor Covenant 
-(http:contributor-covenant.org), version 1.0.0, available at 
+(http://contributor-covenant.org), version 1.0.0, available at 
 http://contributor-covenant.org/version/1/0/0/
diff --git a/CRAN-RELEASE b/CRAN-RELEASE
@@ -1,2 +1,2 @@
-This package was submitted to CRAN on 2019-03-17.
-Once it is accepted, delete this file and tag the release (commit 972e711c4b).
+This package was submitted to CRAN on 2019-06-14.
+Once it is accepted, delete this file and tag the release (commit c4ad59643b).
diff --git a/NAMESPACE b/NAMESPACE
@@ -203,7 +203,6 @@ importFrom(stats,na.omit)
 importFrom(stats,oneway.test)
 importFrom(stats,p.adjust)
 importFrom(stats,pairwise.t.test)
-importFrom(stats,pchisq)
 importFrom(stats,pt)
 importFrom(stats,ptukey)
 importFrom(stats,qnorm)

diff --git a/R/ggbarstats.R b/R/ggbarstats.R
@@ -54,7 +54,7 @@
 #'   labels.legend = c("0 = V-shaped", "1 = straight"),
 #'   legend.title = "Engine"
 #' )
-#' \dontrun{
+#' \donttest{
 #' # simple function call with the defaults (with count data)
 #' library(jmv)
 #'

diff --git a/R/ggbetweenstats.R b/R/ggbetweenstats.R
@@ -171,7 +171,7 @@
 #'   title = "Fuel efficiency by type of car transmission",
 #'   caption = "Transmission (0 = automatic, 1 = manual)"
 #' )
-#' \dontrun{
+#' \donttest{
 #' # more detailed function call
 #' ggstatsplot::ggbetweenstats(
 #'   data = datasets::morley,

diff --git a/R/ggcoefstats.R b/R/ggcoefstats.R
@@ -204,7 +204,7 @@
 #' ggstatsplot::ggcoefstats(x = mod, output = "augment")
 #'
 #' # -------------- with custom dataframe -----------------------------------
-#' \dontrun{
+#' \donttest{
 #' # creating a dataframe
 #' df <-
 #'   structure(

diff --git a/R/grouped_ggbarstats.R b/R/grouped_ggbarstats.R
@@ -26,7 +26,7 @@
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #' # with condition and with count data
 #' library(jmv)
 #'

diff --git a/R/grouped_ggbetweenstats.R b/R/grouped_ggbetweenstats.R
@@ -40,7 +40,7 @@
 #'   grouping.var = drv,
 #'   conf.level = 0.99
 #' )
-#' \dontrun{
+#' \donttest{
 #' # modifying individual plots using `ggplot.component` argument
 #' ggstatsplot::grouped_ggbetweenstats(
 #'   data = dplyr::filter(

diff --git a/R/grouped_ggpiestats.R b/R/grouped_ggpiestats.R
@@ -42,7 +42,7 @@
 #' )
 #'
 #' # the following will take slightly more amount of time
-#' \dontrun{
+#' \donttest{
 #' # for reproducibility
 #' set.seed(123)
 #'

diff --git a/R/grouped_ggscatterstats.R b/R/grouped_ggscatterstats.R
@@ -27,7 +27,7 @@
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #' # to ensure reproducibility
 #' set.seed(123)
 #'

diff --git a/R/helpers_effsize_ci.R b/R/helpers_effsize_ci.R
@@ -31,7 +31,8 @@
 #' @importFrom stats na.omit
 #'
 #' @examples
-#' \dontrun{
+#'
+#' \donttest{
 #' set.seed(123)
 #' ggstatsplot:::t1way_ci(
 #'   data = dplyr::filter(ggplot2::msleep, vore != "insecti"),
@@ -180,7 +181,8 @@ t1way_ci <- function(data,
 #' @importFrom stats na.omit
 #'
 #' @examples
-#' \dontrun{
+#'
+#' \donttest{
 #' ggstatsplot:::yuend_ci(
 #'   data = dplyr::filter(
 #'     .data = ggstatsplot::iris_long,
@@ -346,7 +348,8 @@ yuend_ci <- function(data,
 #' @importFrom stats na.omit
 #'
 #' @examples
-#' \dontrun{
+#'
+#' \donttest{
 #' ggstatsplot:::robcor_ci(
 #'   data = mtcars,
 #'   x = "hp",
@@ -486,7 +489,8 @@ robcor_ci <- function(data,
 #' @importFrom stats na.omit
 #'
 #' @examples
-#' \dontrun{
+#'
+#' \donttest{
 #' ggstatsplot:::kw_eta_h_ci(
 #'   data = ggplot2::msleep,
 #'   x = vore,

diff --git a/R/helpers_ggbetween_anova_subtitles.R b/R/helpers_ggbetween_anova_subtitles.R
@@ -482,7 +482,7 @@ subtitle_anova_nonparametric <- function(data,
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #' # for reproducibility
 #' set.seed(123)
 #'
@@ -664,7 +664,7 @@ subtitle_anova_robust <- function(data,
 #' @importFrom sjstats eta_sq omega_sq
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' set.seed(123)
 #'
 #' # between-subjects ---------------------------------------

diff --git a/R/helpers_ggbetween_t_subtitles.R b/R/helpers_ggbetween_t_subtitles.R
@@ -219,7 +219,7 @@ subtitle_t_parametric <- function(data,
 #'   below.
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' set.seed(123)
 #'
 #' # -------------- between-subjects design ------------------------
@@ -693,7 +693,7 @@ subtitle_t_bayes <- function(data,
 #' }
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' #---------------- two-sample test ------------------------------------
 #'
 #' # creating a smaller dataset

diff --git a/R/helpers_ggcatstats.R b/R/helpers_ggcatstats.R
@@ -20,10 +20,8 @@
 #'
 #' @importFrom dplyr mutate
 #' @importFrom rlang !! :=
-#' @importFrom stats pchisq
 #'
 #' @examples
-#' \dontrun{
 #'
 #' # dataframe with label column
 #' ggstatsplot:::cat_label_df(
@@ -32,8 +30,6 @@
 #'   label.content = "both",
 #'   perc.k = 1
 #' )
-#' }
-#'
 #' @keywords internal
 
 # function body

diff --git a/R/helpers_ggcoefstats.R b/R/helpers_ggcoefstats.R
@@ -5,7 +5,7 @@
 #' @inheritParams tfz_labeller
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' # show all columns in output tibble
 #' options(tibble.width = Inf)
 #'
@@ -753,7 +753,7 @@ subtitle_meta_ggcoefstats <- function(data,
 #'
 #' @examples
 #'
-#' \dontrun{
+#' \donttest{
 #' # setup
 #' set.seed(123)
 #' library(metaBMA)

diff --git a/R/helpers_ggcorrmat.R b/R/helpers_ggcorrmat.R
@@ -13,7 +13,7 @@
 #' @importFrom stats median
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' ggstatsplot:::numdf_summary(ggplot2::msleep)
 #' }
 #'

diff --git a/R/helpers_gghistostats.R b/R/helpers_gghistostats.R
@@ -112,7 +112,7 @@ line_labeller <- function(plot,
 #'   for centrality parameter label. (Default: `2`).
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' library(ggplot2)
 #'
 #' # creating a ploton which lines and labels are to be superposed

diff --git a/R/helpers_messages.R b/R/helpers_messages.R
@@ -202,14 +202,11 @@ grouped_message <- function() {
 #' @family helper_messages
 #'
 #' @examples
-#' \dontrun{
 #' ggstatsplot:::palette_message(
 #'   package = "RColorBrewer",
 #'   palette = "Dark2",
 #'   min_length = 20
 #' )
-#' }
-#'
 #' @keywords internal
 
 # function body
@@ -295,7 +292,7 @@ effsize_ci_message <- function(nboot = 100, conf.level = 0.95) {
 #'   contingency table analyses.
 #'
 #' @examples
-#' \dontrun{
+#' \donttest{
 #' ggstatsplot:::proptest_message(main = "am", condition = "cyl")
 #' }
 #'

diff --git a/R/helpers_pairwise_comparison.R b/R/helpers_pairwise_comparison.R
@@ -185,7 +185,7 @@ games_howell <- function(data,
 #' @examples
 #'
 #' # time consuming, so not run on `CRAN` machines
-#' \dontrun{
+#' \donttest{
 #' # show all columns in a tibble
 #' options(tibble.width = Inf)
 #'

diff --git a/R/kendall_w_ci.R b/R/kendall_w_ci.R
@@ -12,13 +12,10 @@
 #' @param ... Additional arguments (currently ignored).
 #'
 #' @examples
-#' \dontrun{
 #' set.seed(123)
 #' library(jmv)
 #' data("bugs", package = "jmv")
 #' ggstatsplot:::kendall_w_ci(dplyr::select(bugs, LDLF:HDHF))
-#' }
-#'
 #' @keywords internal
 
 kendall_w_ci <- function(data,

diff --git a/README.Rmd b/README.Rmd
@@ -14,13 +14,13 @@ knitr::opts_chunk$set(
 )
 ```
 
-# ggstatsplot: `ggplot2` Based Plots with Statistical Details
+# `ggstatsplot`: `ggplot2` Based Plots with Statistical Details
 
 Package | Status | Usage | GitHub | References
 ----------------- | ----------------- | ----------------- | ----------------- | -----------------
 [![CRAN_Release_Badge](http://www.r-pkg.org/badges/version-ago/ggstatsplot)](https://CRAN.R-project.org/package=ggstatsplot) | [![Travis Build Status](https://travis-ci.org/IndrajeetPatil/ggstatsplot.svg?branch=master)](https://travis-ci.org/IndrajeetPatil/ggstatsplot) | [![Daily downloads badge](https://cranlogs.r-pkg.org/badges/last-day/ggstatsplot?color=blue)](https://CRAN.R-project.org/package=ggstatsplot) | [![GitHub version](https://img.shields.io/badge/GitHub-0.0.11.9000-orange.svg?style=flat-square)](https://github.com/IndrajeetPatil/ggstatsplot/) | [![Website](https://img.shields.io/badge/website-ggstatsplot-orange.svg?colorB=E91E63)](https://indrajeetpatil.github.io/ggstatsplot/)
 [![CRAN Checks](https://cranchecks.info/badges/summary/ggstatsplot)](https://cran.r-project.org/web/checks/check_results_ggstatsplot.html) | [![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/IndrajeetPatil/ggstatsplot?branch=master&svg=true)](https://ci.appveyor.com/project/IndrajeetPatil/ggstatsplot) | [![Weekly downloads badge](https://cranlogs.r-pkg.org/badges/last-week/ggstatsplot?color=blue)](https://CRAN.R-project.org/package=ggstatsplot) | [![Forks](https://img.shields.io/badge/forks-`r itdepends:::get_github_info("ggstatsplot")$forks[[1]]`-blue.svg)](https://github.com/IndrajeetPatil/ggstatsplot/) | [![Rdoc](https://www.rdocumentation.org/badges/version/ggstatsplot)](https://www.rdocumentation.org/packages/ggstatsplot)
-[![minimal R version](https://img.shields.io/badge/R%3E%3D-3.5.0-6666ff.svg)](https://cran.r-project.org/) | [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/) | [![Monthly downloads badge](https://cranlogs.r-pkg.org/badges/last-month/ggstatsplot?color=blue)](https://CRAN.R-project.org/package=ggstatsplot) | [![Github Issues](https://img.shields.io/badge/issues-`r itdepends:::get_github_info("ggstatsplot")$open_issues[[1]]`-red.svg)](https://github.com/IndrajeetPatil/ggstatsplot/issues) | [![vignettes](https://img.shields.io/badge/vignettes-0.0.11-orange.svg?colorB=FF5722)](https://cran.r-project.org/web/packages/ggstatsplot/vignettes/)
+[![minimal R version](https://img.shields.io/badge/R%3E%3D-3.5.0-6666ff.svg)](https://cran.r-project.org/) | [![lifecycle](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/) | [![Monthly downloads badge](https://cranlogs.r-pkg.org/badges/last-month/ggstatsplot?color=blue)](https://CRAN.R-project.org/package=ggstatsplot) | [![Github Issues](https://img.shields.io/badge/issues-`r itdepends:::get_github_info("ggstatsplot")$open_issues[[1]]`-red.svg)](https://github.com/IndrajeetPatil/ggstatsplot/issues) | [![vignettes](https://img.shields.io/badge/vignettes-0.0.11-orange.svg?colorB=FF5722)](https://CRAN.R-project.org/package=ggstatsplot/vignettes/)
 [![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/IndrajeetPatil/ggstatsplot.svg)](https://github.com/IndrajeetPatil/ggstatsplot) | [![Coverage Status](https://coveralls.io/repos/github/IndrajeetPatil/ggstatsplot/badge.svg?branch=master)](https://coveralls.io/github/IndrajeetPatil/ggstatsplot?branch=master) | [![Total downloads badge](https://cranlogs.r-pkg.org/badges/grand-total/ggstatsplot?color=blue)](https://CRAN.R-project.org/package=ggstatsplot) | [![Github Stars](https://img.shields.io/github/stars/IndrajeetPatil/ggstatsplot.svg?style=social&label=Github)](https://github.com/IndrajeetPatil/ggstatsplot) | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.2074621.svg)](https://doi.org/10.5281/zenodo.2074621)
 [![Licence](https://img.shields.io/badge/licence-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html) | [![Codecov test coverage](https://codecov.io/gh/IndrajeetPatil/ggstatsplot/branch/master/graph/badge.svg)](https://codecov.io/gh/IndrajeetPatil/ggstatsplot?branch=master) | [![HitCount](http://hits.dwyl.io/IndrajeetPatil/ggstatsplot.svg)](http://hits.dwyl.io/IndrajeetPatil/ggstatsplot) | [![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-yellowgreen.svg)](https://github.com/IndrajeetPatil/ggstatsplot/commits/master) | [![GitHub last commit](https://img.shields.io/github/last-commit/IndrajeetPatil/ggstatsplot.svg)](https://github.com/IndrajeetPatil/ggstatsplot/commits/master)
 [![status](https://tinyverse.netlify.com/badge/ggstatsplot)](https://CRAN.R-project.org/package=ggstatsplot) | [![Covrpage Summary](https://img.shields.io/badge/covrpage-Last_Build_2019_05_25-yellowgreen.svg)](https://github.com/IndrajeetPatil/ggstatsplot/blob/master/tests/README.md) | [![saythanks](https://img.shields.io/badge/Say%20Thanks-!-1EAEDB.svg)](https://saythanks.io/to/IndrajeetPatil) | [![Project Status](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active) | [![contributions welcome](https://img.shields.io/badge/contributions-welcome-brightgreen.svg?style=flat)](https://github.com/IndrajeetPatil/ggstatsplot/issues)
@@ -230,11 +230,10 @@ Here are examples of the main functions currently supported in `ggstatsplot`.
 **Note**: If you are reading this on GitHub repository, the documentation below
 is for the **development** version of the package. So you may see some features
 available here that are not currently present in the stable version of this
-package on **CRAN**. For documentation relevant for the CRAN version, see:
+package on **CRAN**. For documentation relevant for the `CRAN` version, see:
 
-  - vignettes: <https://cran.r-project.org/web/packages/ggstatsplot/vignettes/>
-  - README:
-    <https://cran.r-project.org/web/packages/ggstatsplot/readme/README.html>
+  - vignettes: <https://CRAN.R-project.org/package=ggstatsplot/vignettes/>
+  - README: <https://CRAN.R-project.org/package=ggstatsplot/readme/README.html>
 
 ## `ggbetweenstats`