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Opening discussion about samplesheet_generator #1

Merged
merged 19 commits into from
Mar 6, 2024
Merged

Opening discussion about samplesheet_generator #1

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ebf43d1
Fixed some README.md typos.
tinavisnovska Feb 7, 2024
2cb383d
Added the Introduction section into the Contents in README.md
tinavisnovska Feb 8, 2024
26bd6c0
Removed unnecessary comments from indexes/TSO500_NextSeq_simple_index…
tinavisnovska Feb 14, 2024
f0d201f
Removed unnecessary comments from indexes/TSO500_NovaSeq_dual_indexes…
tinavisnovska Feb 14, 2024
420ebef
Simplified and cleaned Dockerfile.
tinavisnovska Feb 14, 2024
0099dbb
In samplesheet_generator.py: added choices for some parameters, remov…
tinavisnovska Feb 14, 2024
77f2bba
Moved all the test related data to the test folder.
tinavisnovska Feb 14, 2024
3f1b418
Expanded parameter describing table, improved Inrto.
tinavisnovska Feb 15, 2024
e0e9568
Fixed typo.
tinavisnovska Feb 15, 2024
57be03c
Set up pytest testing with a simple test.
tinavisnovska Feb 20, 2024
b97f576
Added testing container for unit tests into workflows/main.yml
tinavisnovska Feb 21, 2024
5290dbf
Added test input vars in generator/tests/cli_test.py
tinavisnovska Feb 21, 2024
431828e
Made the basic unit testing work.
tinavisnovska Feb 21, 2024
00ce914
Fixed dual_indexes condition.
tinavisnovska Feb 21, 2024
438c22b
removing requirements-test.txt for now, can be added when used in dev…
tinavisnovska Feb 21, 2024
6f22ecf
Attempted to make github actions work on a fork, .github/workflows/m…
tinavisnovska Feb 26, 2024
87b4ba2
Attempted to make the actions work, fixed dependencies.
tinavisnovska Feb 26, 2024
0c22771
Attempt to fix actions and module discovery
tinavisnovska Feb 26, 2024
c731f16
Upgraded pandas back to 2.2.0, relaxed python requirements to >= 3.9 …
tinavisnovska Feb 27, 2024
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