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Update README.md
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@xiaoliz0
xiaoliz0 authored Dec 13, 2023
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Expand Up @@ -14,11 +14,11 @@ Under the downloaded folder and install the module with command: [sudo python se

# File infrastructure
INPUT:
Script/PRONTO.py --- The python script.
Config/configure_PRONTO.ini --- The configure file. Local changes is needed to set up.
In/Templates/MTB_template.pptx --- The template file used for generating PP report.
In/InPreD_PRONTO_metadata.txt --- The clinical data file. Reports will be generated for the Sample_id with "Create_report==Y" in this file.
In/MTF/IPD-XXXX_Material Transit Form InPreD NGS.xlsx --- The material file contains all patient personal information. (Used by OUS)
Script/PRONTO.py --- The python script.
Config/configure_PRONTO.ini --- The configure file. Local changes is needed to set up.
In/Templates/MTB_template.pptx --- The template file used for generating PP report.
In/InPreD_PRONTO_metadata.txt --- The clinical data file. Reports will be generated for the Sample_id with "Create_report==Y" in this file.
In/MTF/IPD-XXXX_Material Transit Form InPreD NGS.xlsx --- The material file contains all patient personal information. (Used by OUS) This file will generate the inpred-samle-id following the nomenclature file.

OUTPUT:
Out/$runID/IPDXXX --- The folder contains all results for this sample.
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