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Update README.md
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xiaoliz0 authored Dec 6, 2023
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6 changes: 4 additions & 2 deletions README.md
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Expand Up @@ -66,7 +66,8 @@ Run PRONTO with docker image:
"$InPreD_PRONTO_metadata_file" is your local InPreD meta data file which contains clinical data for samples.
"$pronto_output_dir" is the path in your local environment to store the reports generated by PRONTO.

NB: Running PRONTO with docker, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file.
NB:
Running PRONTO with docker, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file.
Please keep the "data_path =/pronto/tsoppi_data" in Config/configure_PRONTO.ini.

# PRONTO Singularity
Expand All @@ -82,5 +83,6 @@ Run PRONTO image with Singularity:
"$InPreD_PRONTO_metadata_file" is your local InPreD meta data file which contains clinical data for samples.
"$pronto_output_dir" is the path in your local environment to store the reports generated by PRONTO.py.

NB: Running PRONTO with singularity, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file.
NB:
Running PRONTO with singularity, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file.
Please keep the "data_path =/pronto/tsoppi_data" in Config/configure_PRONTO.ini.

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