Update README.md

README.md

@@ -66,6 +66,9 @@ Run PRONTO with docker image:
 "$InPreD_PRONTO_metadata_file" is your local InPreD meta data file which contains clinical data for samples.                                      
 "$pronto_output_dir" is the path in your local environment to store the reports generated by PRONTO.
 
+NB: Running PRONTO with docker, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file.            
+Please keep the "data_path =/pronto/tsoppi_data" in Config/configure_PRONTO.ini.
+
 # PRONTO Singularity
 Download PRONTO docker image in the dockerhub with the latest tag: [docker pull inpred/pronto:latest]                                                         
 Save the PRONTO docker image to a tar file: [docker save -o PRONTO_docker_image.tar inpred/pronto:latest]                                             
@@ -78,3 +81,6 @@ Run PRONTO image with Singularity:
 "$tsoppi_data" is the path of your local TSOPPI results, where contains all runs of TSOPPI data not the folder for individual runs.            
 "$InPreD_PRONTO_metadata_file" is your local InPreD meta data file which contains clinical data for samples.                                      
 "$pronto_output_dir" is the path in your local environment to store the reports generated by PRONTO.py.
+
+NB: Running PRONTO with singularity, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file.            
+Please keep the "data_path =/pronto/tsoppi_data" in Config/configure_PRONTO.ini.