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[pull] main from pydata:main #565

Merged
merged 26 commits into from
Jul 20, 2024
Merged

[pull] main from pydata:main #565

merged 26 commits into from
Jul 20, 2024

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Illviljan and others added 13 commits July 10, 2024 09:34
* Cleanup test_coding_times

* Update test_coding_times.py
* Use duck_array_ops.ravel

* Use duck_array_ops.reshape
* MRC -- Selecting with string for cftime

See discussion in #9138

This commit and pull request mostly serves as a staging group for a
potential fix.

Test with:

```
pytest xarray/tests/test_cftimeindex.py::test_cftime_noleap_with_str
```

* effectively remove fastpath

* Add docstring

* Revert "effectively remove fastpath"

This reverts commit 0f1a5a2.

* Fix by reassigning coordinate

* Update what's new entry

* Simplify if condition

---------

Co-authored-by: Spencer Clark <[email protected]>
* don't remove `netcdf4` from the upstream-dev environment

* also stop removing `h5py` and `hdf5`

* hard-code the precision (I believe this was missed in #9081)

* don't remove `h5py` either

* use on-diks _FillValue as standrd expects, use view instead of cast to prevent OverflowError.

* whats-new

* unpin `numpy`

* rework UnsignedCoder

* add test

* Update xarray/coding/variables.py

Co-authored-by: Justus Magin <[email protected]>

---------

Co-authored-by: Kai Mühlbauer <[email protected]>
Co-authored-by: Kai Mühlbauer <[email protected]>
Co-authored-by: Deepak Cherian <[email protected]>
* don't remove `cf_units` (and thus `iris`) [skip-ci]

* try keeping netcdf4, h5netcdf, and h5py
* `NaN` → `nan`

* new numpy scalar repr

* unpin `numpy` in the docs [skip-ci]

* try extracting the scalars to pass to `linspace`

* use `numpy` instead of `numpy.array_api` [skip-ci]

and mention that we're falling back to `numpy.array_api` in `numpy<2.0`

* Update ci/requirements/doc.yml

* Remove 2D cross product doctests

* One more fix

---------

Co-authored-by: Jessica Scheick <[email protected]>
Co-authored-by: Deepak Cherian <[email protected]>
Co-authored-by: Deepak Cherian <[email protected]>
* Add a `.drop_attrs` method

Part of #3891

* Add tests

* Add explicit coords test

* Use `._replace` for half the method

* .

* Add a `deep` kwarg (default `True`?)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* api

* Update xarray/core/dataarray.py

Co-authored-by: Michael Niklas  <[email protected]>

* Update xarray/core/dataset.py

Co-authored-by: Michael Niklas  <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Michael Niklas <[email protected]>
This reverts commit 42fd510.
This reverts commit f85da8a.
@pull pull bot added the ⤵️ pull label Jul 12, 2024
max-sixty and others added 13 commits July 12, 2024 17:52
Seems to require adding an exclude for `build` and an `__init__.py` file in the `properties` directory...
* Fix typing for test_plot.py

* Update test_plot.py

* make sure we actually get ndarrays here, I get it locally at least

* Add a minimal test and ignore in real test

* Update test_plot.py

* Update test_plot.py
* allow per-variable choice of mask_and_scale in open_dataset

* simplify docstring datatype

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* dict -> Mapping in type annotation

Co-authored-by: Michael Niklas  <[email protected]>

* use typevar for _item_or_default annotation

Otherwise you lose all typing when you use that because it returns Any.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* implement feature for 4 additional parameters

* fix default value inconsistency

* add what's new + None annotation

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* _item_or_default return type T | None

* remove deault default value _item_or_default

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* docstring dtype naming

---------

Co-authored-by: Mathijs Verhaegh <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Michael Niklas <[email protected]>
* remove pandas from ignore missing imports

* add Any to dim arg of concat as placeholder

* allow sequence of np.ndarrays as coords in dataArray constructor

* fix several typing issues in tests

* fix more types

* more fixes

* more typing...

* we are getting there?

* who might have guessed it... more typing

* continue fixing typing issues

* fix some typed_ops

* fix last non-typed-ops errors

* update typed ops

* remove useless DaskArray type in scalar or array type

* fix missing import in type_checking

* fix import

* improve cftime offsets typing

* fix classvars

* fix some checks

* fix a broken test

* improve typing of test_concat

* fix broken concat

* add whats-new

---------

Co-authored-by: Maximilian Roos <[email protected]>
- Solve the numpy issues with appropriate ignores
- Hide the NamedArray issues with blanket ignores
* Grouper, Resampler as public API

* Add test

* Add docs

* Fix test

* fix types.

* bugfix

* Better binning API

* docs.fixes

* Apply suggestions from code review

Co-authored-by: Illviljan <[email protected]>

* Fix typing

* clean up reprs

* Allow passing dicts

* Apply suggestions from code review

Co-authored-by: Justus Magin <[email protected]>

* Update xarray/core/common.py

Co-authored-by: Justus Magin <[email protected]>

* Review comments

* Fix docstring

* Try to fix typing

* Nicer error

* Try fixing types

* fix

* Apply suggestions from code review

Co-authored-by: Michael Niklas  <[email protected]>

* Review comments

* Add whats-new note

* Fix

* Add more types

* Fix link

---------

Co-authored-by: Illviljan <[email protected]>
Co-authored-by: Justus Magin <[email protected]>
Co-authored-by: Michael Niklas <[email protected]>
Co-authored-by: Deepak Cherian <[email protected]>
* Remove `base`, `loffset` in Resampler

* resample: Remove how/dim checks

* lint

* cleanups

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update test_cftimeindex_resample.py

* cleanup

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* groupby, resample: Deprecate some positional args

* Change version to 2024.07.0
@pull pull bot merged commit 91a52dc into Illviljan:main Jul 20, 2024
16 checks passed
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10 participants