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fix: reset overview table formatter to older version #448

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merged 1 commit into from
Jan 13, 2022
Merged

fix: reset overview table formatter to older version #448

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163 changes: 82 additions & 81 deletions resources/report-table-formatter.js
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Original file line number Diff line number Diff line change
@@ -1,100 +1,101 @@
{
"Pango Lineage" : function format(value) { // prettier-ignore
$(function () {
$('[data-toggle="tooltip"]').tooltip();
});
"Pango Lineage": function format(value) {
$(function () {
$('[data-toggle="tooltip"]').tooltip()
})

if (value !== "no strain called") {
var link = `<a data-toggle="tooltip" data-placement="top" title="View ${value} on outbreak.info" href='https://outbreak.info/situation-reports?pango=${value}' target='_blank'>${value}</a>`;
return link;
} else {
return value;
}
}
"variant helper" : function format(value, voi) {
$(function () {
$('[data-toggle="popover"]').popover();
});
if (value !== "no strain called") {
var link = `<a data-toggle="tooltip" data-placement="top" title="View ${value} on outbreak.info" href='https://outbreak.info/situation-reports?pango=${value}' target='_blank'>${value}</a>`;
return link;
} else {
return value;
}
},
"variant helper": function format(value, voi) {
$(function () {
$('[data-toggle="popover"]').popover()
})

$(function () {
$('[data-toggle="tooltip"]').tooltip();
});
$(function () {
$('[data-toggle="tooltip"]').tooltip()
})

$('.popover-dismiss').popover({
trigger: 'focus'
})

var variants = value.split(' ');
var genes = [];
var vafs = {};
var vats = {};
for (var v of variants) {
var split = v.split(':');
genes.push(split[0]);
}

$(".popover-dismiss").popover({
trigger: "focus",
});
for (var g of genes) {
vafs[g] = [];
vats[g] = [];
}

var variants = value.split(" ");
var genes = [];
var vafs = {};
var vats = {};
for (var v of variants) {
var split = v.split(":");
genes.push(split[0]);
}
for (var v of variants) {
var split = v.split(':');
vafs[split[0]].push(split[2]);
vats[split[0]].push(split[1]);
}

for (var g of genes) {
vafs[g] = [];
vats[g] = [];
}
const table = `<table class="table">
<thead>
<tr>
<th scope="col">Variant</th>
<th scope="col">VAF</th>
</tr>
</thead>
<tbody>`;

for (var v of variants) {
var split = v.split(":");
vafs[split[0]].push(split[2]);
vats[split[0]].push(split[1]);
}
const table_end = "</tbody></table>";

const table = `<table class="table">
<thead>
<tr>
<th scope="col">Variant</th>
<th scope="col">VAF</th>
</tr>
</thead>
<tbody>`;
var tables = {};

const table_end = "</tbody></table>";
for (g of genes) {
var body = "";
for (let i = 0; i < vafs[g].length; i++) {
var row = `<tr><td scope="col">${vats[g][i]}</td><td>${vafs[g][i]}</td></tr>`;
body = body + row;
}
tables[g] = table + body + table_end;
}

var tables = {};
let result = [];
let unique_genes = [...new Set(genes)];

for (g of genes) {
var body = "";
for (let i = 0; i < vafs[g].length; i++) {
var row = `<tr><td scope="col">${vats[g][i]}</td><td>${vafs[g][i]}</td></tr>`;
body = body + row;
for (g of unique_genes) {
if (voi) {
var x = "";
for (let i = 0; i < vats[g].length; i++) {
var x = `<a href="#" data-toggle="popover" data-trigger="focus" data-html='true' title='Gene: <a data-html="true" data-toggle="tooltip" data-placement="bottom" title="Linkout to gene in Ensembl genome browser" href="https://covid-19.ensembl.org/Sars_cov_2/Gene/Summary?g=${g}" target="_blank">${g}:${vats[g][i]}</a>' data-content='${tables[g]}'>${g}:${vats[g][i]}</a>`;
result.push(x);
}
} else {
var x = `<a href="#" data-toggle="popover" data-trigger="focus" data-html='true' title='Gene: <a data-html="true" data-toggle="tooltip" data-placement="bottom" title="Linkout to gene in Ensembl genome browser" href="https://covid-19.ensembl.org/Sars_cov_2/Gene/Summary?g=${g}" target="_blank">${g}</a>' data-content='${tables[g]}'>${g}</a>`;
result.push(x);
}
}
tables[g] = table + body + table_end;
}

let result = [];
let unique_genes = [...new Set(genes)];
result = result.join(", ");

for (g of unique_genes) {
if (voi) {
var x = "";
for (let i = 0; i < vats[g].length; i++) {
var x = `<a href="#" data-toggle="popover" data-trigger="focus" data-html='true' title='Gene: <a data-html="true" data-toggle="tooltip" data-placement="bottom" title="Linkout to gene in Ensembl genome browser" href="https://covid-19.ensembl.org/Sars_cov_2/Gene/Summary?g=${g}" target="_blank">${g}:${vats[g][i]}</a>' data-content='${tables[g]}'>${g}:${vats[g][i]}</a>`;
result.push(x);
}
if (value.trim() !== "") {
return result;
} else {
var x = `<a href="#" data-toggle="popover" data-trigger="focus" data-html='true' title='Gene: <a data-html="true" data-toggle="tooltip" data-placement="bottom" title="Linkout to gene in Ensembl genome browser" href="https://covid-19.ensembl.org/Sars_cov_2/Gene/Summary?g=${g}" target="_blank">${g}</a>' data-content='${tables[g]}'>${g}</a>`;
result.push(x);
return "";
}
}

result = result.join(", ");

if (value.trim() !== "") {
},
"VOC Mutations": function format(value) {
return this["variant helper"](value, true);
},
"Other Mutations": function format(value) {
let result = this["variant helper"](value, false);
return result;
} else {
return "";
}
}
"VOC Mutations" : function format(value) {
return this["variant helper"](value, true);
}
"Other Mutations" : function format(value) {
let result = this["variant helper"](value, false);
return result;
}
}
}