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IKIM-Essen · Aug 19, 2024 · e4bb2fa · e4bb2fa
1 parent f68ef53
commit e4bb2fa
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/workflow/rules/ref.smk b/workflow/rules/ref.smk
@@ -221,9 +221,9 @@ rule update_lineages:
 
 rule update_pangolin:
     output:
-        "results/{date}/pangolin/update.log",
+        "results/{date}/pangolin/pangolin-data.log",
     log:
-        "logs/{date}/pangolin/update.log",
+        "logs/{date}/pangolin/pangolin-data.log",
     conda:
         "../envs/pangolin.yaml"
     shell:

diff --git a/workflow/rules/strain_calling.smk b/workflow/rules/strain_calling.smk
@@ -141,7 +141,7 @@ rule kallisto_plot_all_strains:
 rule pangolin_call_strains:
     input:
         contigs=get_pangolin_input,
-        update="results/{date}/pangolin/update.log",
+        update="results/{date}/pangolin/pangolin-data.log",
     output:
         "results/{date}/tables/strain-calls/{sample}.{stage}.strains.pangolin.csv",
     log: