chore(master): release 0.14.0

CHANGELOG.md

@@ -1,5 +1,34 @@
 # Changelog
 
+## [0.14.0](https://github.com/IKIM-Essen/uncovar/compare/v0.13.2...v0.14.0) (2022-02-15)
+
+
+### Features
+
+* call known lineage variants ([#392](https://github.com/IKIM-Essen/uncovar/issues/392)) ([9ad720c](https://github.com/IKIM-Essen/uncovar/commit/9ad720c32f1b246b5ef8a20871063a05dfd682b8))
+* **deps:** bump github/super-linter from 4.8.6 to 4.8.7 ([#459](https://github.com/IKIM-Essen/uncovar/issues/459)) ([c18f241](https://github.com/IKIM-Essen/uncovar/commit/c18f2412f576b26050e3296bdcc509cd5facf462))
+* **deps:** update pangolin to 3.1.19 ([#461](https://github.com/IKIM-Essen/uncovar/issues/461)) ([3971687](https://github.com/IKIM-Essen/uncovar/commit/3971687db229577fa862b40f900701f18270011d))
+* **deps:** update pangolin to 3.1.19 ([#461](https://github.com/IKIM-Essen/uncovar/issues/461)) ([d5f42ca](https://github.com/IKIM-Essen/uncovar/commit/d5f42ca229c038adaf0ccb1ce772aaa4e229b1fe))
+* **deps:** update pangolin to 3.1.20 ([#467](https://github.com/IKIM-Essen/uncovar/issues/467)) ([78cb7f4](https://github.com/IKIM-Essen/uncovar/commit/78cb7f4452fe703194aed2fb393649572b60519c))
+* rule and script bed_to_bedpe ([#447](https://github.com/IKIM-Essen/uncovar/issues/447)) ([3022eab](https://github.com/IKIM-Essen/uncovar/commit/3022eab0854992fb40894c7b1dd0feca8400b2fc))
+
+
+### Bug Fixes
+
+* bump rust-bio-tools to 0.38 ([#449](https://github.com/IKIM-Essen/uncovar/issues/449)) ([e85fa15](https://github.com/IKIM-Essen/uncovar/commit/e85fa15f0489185b9fc7a851005da1078c06c3fb))
+* correct filtering in plot-lineages-over-time ([#445](https://github.com/IKIM-Essen/uncovar/issues/445)) ([c71f72b](https://github.com/IKIM-Essen/uncovar/commit/c71f72bad90cc32923b7de6ffcc6de66367cf6ff))
+* **deps:** update multiqc wrapper ([#329](https://github.com/IKIM-Essen/uncovar/issues/329)) ([42fbcd8](https://github.com/IKIM-Essen/uncovar/commit/42fbcd8bc442d5c1e2142fc6c14406819c2b63bb))
+* fixed include flag KeyError ([#452](https://github.com/IKIM-Essen/uncovar/issues/452)) ([f47dad2](https://github.com/IKIM-Essen/uncovar/commit/f47dad20891a447e202aa2ff3f1712b77daaa593))
+* order of include flag sample ([#462](https://github.com/IKIM-Essen/uncovar/issues/462)) ([429e5d9](https://github.com/IKIM-Essen/uncovar/commit/429e5d9447b64dfbd20bcfaa924feb5fae7ddfb9))
+* remove removal of .indicators/replacement_notice.txt for int ([#457](https://github.com/IKIM-Essen/uncovar/issues/457)) ([c5b9f6c](https://github.com/IKIM-Essen/uncovar/commit/c5b9f6c02c6e65646d0bc748cef5962b56322b3e))
+* rename column header in report formatter ([#444](https://github.com/IKIM-Essen/uncovar/issues/444)) ([8ba21d9](https://github.com/IKIM-Essen/uncovar/commit/8ba21d90caa0e312e4619fc02e1a38f84039805b))
+* reset over table formatter ([#448](https://github.com/IKIM-Essen/uncovar/issues/448)) ([ee30a46](https://github.com/IKIM-Essen/uncovar/commit/ee30a46bc966413fbd1f8d616a3f1f97b356ff72))
+
+
+### Performance Improvements
+
+* optimisations for ont - barcode+adapter-trimming, primer-trimming (porechop) and read correction (Canu) ([#454](https://github.com/IKIM-Essen/uncovar/issues/454)) ([e844fc4](https://github.com/IKIM-Essen/uncovar/commit/e844fc40923fcaa8c680079a05cd09173027fb00))
+
 ### [0.13.2](https://github.com/IKIM-Essen/uncovar/compare/v0.13.1...v0.13.2) (2022-01-06)
 
 

version.txt

@@ -1 +1 @@
-0.13.2
+0.14.0