fix: changes in path requirements for snakedeploy (#590)

* Changes in path requirements for snakedeploy * fmt * Changed path * Different approach to url passing * fmt * Changed path creation * Update workflow/rules/common.smk Co-authored-by: Johannes Köster <[email protected]> * fmt * Rewind change * Change in directory call * Revert "Change in directory call" This reverts commit b5501c4. --------- Co-authored-by: Johannes Köster <[email protected]> Co-authored-by: Johannes Köster <[email protected]>
IKIM-Essen · Mar 23, 2023 · 406d456 · 406d456
1 parent 9455a57
commit 406d456
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -4,6 +4,7 @@
 # except according to those terms.
 
 from pathlib import Path
+import os.path
 import pandas as pd
 import re
 import random
@@ -212,7 +213,7 @@ def get_fastqs(wildcards):
 
 
 def get_resource(name):
-    return str((Path(workflow.snakefile).parent.parent.parent / "resources") / name)
+    return workflow.source_path(f"../../resources/{name}")
 
 
 def get_report_input(pattern):