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Filesets to swap#56

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will-moore wants to merge 61 commits intoIDR:masterIDR/idr-utils:masterfrom will-moore:filesets_to_swapwill-moore/idr-utils:filesets_to_swapCopy head branch name to clipboard

+9,542,759

Commits

Commits on Jun 13, 2023

• Add script get_filesets_to_swap.py

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  committed
  8f7ea14

• Add idr_filesets.csv

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  9dd111b

Commits on Jun 15, 2023

• Remove .pattern from expected NGFF.ome.zarr names

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  9b3207a

Commits on Aug 18, 2023

• Fix docstring, tweak prints

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  30b215d

• Add /parse_bia_uuids.py and idr0051.csv, idr0054.csv

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  3cdaa30

Commits on Sep 11, 2023

• Add idr0011.csv with a few manual edits

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  17224c4

Commits on Sep 12, 2023

• Add idr0026.csv

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  003b3a3

• Add idr0033.csv

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  504b9d9

Commits on Sep 13, 2023

• Add idr0035.csv

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  7ce43a3

Commits on Sep 14, 2023

• Add idr0010.csv

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  631808b

Commits on Sep 19, 2023

• Add idr0013.csv and tweak parse_bia_uuids.py for idr0013

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  cac35aa

Commits on Sep 20, 2023

• Add idr0016.csv

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  ebbb0b9

Commits on Sep 22, 2023

• Add idr0091.csv

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  04079e9

• Add idr0012.csv

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  25c425d

• Add idr0015.csv - one fileset not on s3 yet

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  8fb22c2

Commits on Sep 26, 2023

• Add missing row to idr0051.csv

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  921793f

Commits on Sep 27, 2023

• Add idr0025.csv

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  9d1ab64

• Remove whitespace in idr0025.csv

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  2b95374

• Add idr0004/sql files

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  8631ec1

• Add idr0004.csv

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  99d89ee

• Add 2 idr0011/sql files with/without Directory rows

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  137327c

Commits on Sep 28, 2023

• Add idr0010/.sql files

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  5120d8a

• Add idr0011/.sql files

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  c23fbd9

• Add idr0012/.sql files

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  a934464

• Add idr0013/.sql files

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  150ed1a

• Add idr0015/.sql. 21112 & 21160 empty, 1 still missing

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  3c92284

• Add idr0016/.sql files

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  25bca90

• Add idr0025/.sql files

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  25b1c0e

• Add idr0026/.sql files

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  93ac1ca

• Add idr0033/.sql files

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  f3eb154

• Add idr0035/.sql files

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  90d0f23

• Add idr0036/.sql files

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  a0727f3

• Add idr0051/.sql files

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  88dc5cf

• Add idr0054/.sql files

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  1dd70d7

• Add idr0091/.sql files

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  83e9872

Commits on Oct 6, 2023

• Add idr0090.csv

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  7a5b3fb

Commits on Oct 9, 2023

• Add idr0090 sql

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  e7594ac

Commits on Oct 10, 2023

• Add idr0036.csv

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  7e2162e

• Fix 'Cancelled' errors in idr0015 sql

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  abb2263

Commits on Oct 11, 2023

• Add UPDATE pixels sql commands to idr0036 sql files

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  8170764

Commits on Oct 16, 2023

• Add clientpath to idr0004 sql

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  d166176

• Add clientpath to idr0010 sql

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  cfb8711

• Add clientpath to idr0011 sql

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  e0e7425

• Add clientpath to idr0012 sql

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  18894af

• Add clientpath to idr0013 sql

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  7dfe966

• Add clientpath to idr0015 sql

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  4eb5105

• Add clientpath to idr0016 ssql

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  da4026a

• Add clientpath to idr0025 sql

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  1d0e3e0

• Add clientpath to idr0026 sql

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  55579ed

• Add clientpath to idr0033 sql

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  7d6b4cc

• Add clientpath to idr0035 sql

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  c49d853

• Add clientpath to idr0051 sql

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  62f6667

• Add clientpath to idr0054 sql

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  8af033a

• Add clientpath to idr0090 sql

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  9e7bfa4

• Add clientpath to idr0091 sql

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  5a917cd

• Add clientpath to idr0036 sql

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  d186099

Commits on Nov 10, 2023

• Update ngff_filesets/idr0015.csv with 3 regenerated plates from EBI

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  cd73bbe

Commits on Nov 13, 2023

• Fix 21112.sql, 21160.sql. Add 21118.sql for idr0015

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  08437f4

Commits on Dec 1, 2023

• Add clientpath to idr0015/21112.sql, 21118.sql and 21160.sql

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  7bb3acf

• Add script add_clientpaths_to_sql.py

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  87e17ab

Commits on Dec 6, 2023

• Remove Filesets from ngff_filesets/ csv files if not ready

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  125c4e5