Remove Filesets from ngff_filesets/ csv files if not ready

scripts/ngff_filesets/idr0004.csv

@@ -10,7 +10,6 @@ idr0004/P149.ome.zarr,S-BIAD867/2b2aab5c-6d70-4e1d-8336-11e7d018759d,12951
 idr0004/P138.ome.zarr,S-BIAD867/2bff1cee-81c0-467b-98f5-01db06f4d042,12939
 idr0004/P128.ome.zarr,S-BIAD867/2f42ce30-0ac3-4056-98d8-9ef1608dc019,13124
 idr0004/P115.ome.zarr,S-BIAD867/35cfc0db-7795-497c-aed5-1ae591b2d9f1,12919
-idr0004/P132.ome.zarr,S-BIAD867/3df515f9-75c8-4cc4-8c29-480ae9817880,13125
 idr0004/P109.ome.zarr,S-BIAD867/430b28a8-a2c9-4d71-8e54-5b45ca051c51,12915
 idr0004/P112.ome.zarr,S-BIAD867/4f4a0699-9f42-4272-a929-9e0139ec3857,12918
 idr0004/P121.ome.zarr,S-BIAD867/59ef0f42-3306-411c-a168-8977911fe63c,12923

scripts/ngff_filesets/idr0011.csv

@@ -1,7 +1,6 @@
 idr0011/Plate11-Green-B.ome.zarr,S-BIAD866/013015ae-64f8-494c-85ee-b4e364960b75,21832
 idr0011/Plate2-Yellow-A.ome.zarr,S-BIAD866/029bd12c-9ee5-4278-a177-a14f52466abc,21757
 idr0011/Plate16-Blue-B.ome.zarr,S-BIAD866/0980f7a9-2ab6-4116-b9a9-59fcbc5ffc63,21823
-idr0011/Plate15-Yellow-A.ome.zarr,S-BIAD866/0e5e1147-449f-4a89-96c6-3a3c85f8c1a7,21851
 idr0011/Plate9-Red-A.ome.zarr,S-BIAD866/0ebb098d-7b05-4d54-b9f0-128833580fba,21764
 idr0011/Plate5-TS-Yellow-B-repeated.ome.zarr,S-BIAD866/10cd251a-f2ff-4623-99dc-a8aec9555c4f,21910
 idr0011/Target-2-A.ome.zarr,S-BIAD866/1217032d-8a87-4bc7-8d22-665791732ec6,21935
@@ -31,7 +30,6 @@ idr0011/Plate8-Green-A.ome.zarr,S-BIAD866/2e88d028-00c3-4020-944e-582cc1b7b967,2
 idr0011/Plate14-Green-B.ome.zarr,S-BIAD866/339b5d39-8388-4443-a1d8-b4dfdf48ad8a,21817
 idr0011/Plate13-Green-A.ome.zarr,S-BIAD866/3503c6a0-a72e-484a-8cc3-dae0ac8bdd83,21841
 idr0011/Plate1-Green-B.ome.zarr,S-BIAD866/35d14872-e021-44fa-9c90-f0f1b55b165b,21685
-idr0011/Plate13-Red-B.ome.zarr,S-BIAD866/36e53731-585a-4b73-9500-8e8b087b1022,21842
 idr0011/Plate6-Red-B.ome.zarr,S-BIAD866/399a3cd7-9684-4d3b-b9eb-b57157b8b914,21853
 idr0011/Plate15-Red-A.ome.zarr,S-BIAD866/4208625e-924e-4307-b768-e8ca20da7477,21850
 idr0011/Plate1-TS-Yellow-B-Stinger.ome.zarr,S-BIAD866/4215f37e-483d-4471-ad57-c5c052a5bda3,22255
@@ -91,7 +89,6 @@ idr0011/Plate13-Red-A.ome.zarr,S-BIAD866/8711441c-7390-4ffc-8ea0-1db37f488e4b,21
 idr0011/Plate1-TS-Red-B-Stinger.ome.zarr,S-BIAD866/88ca4912-eaaf-4f35-8777-8b649155007e,22257
 idr0011/Plate2-TS-Green-B.ome.zarr,S-BIAD866/8ac0df2d-b956-4caf-9f39-cb8f81b5ced1,21927
 idr0011/Plate12-Blue-B.ome.zarr,S-BIAD866/8b791ea4-5a39-4f01-9fef-e98ebd8d1db3,21808
-idr0011/Plate3-Yellow-B.ome.zarr,S-BIAD866/8ba28efa-377f-4602-8c09-41737075ff08,21789
 idr0011/Plate2-TS-Green-A.ome.zarr,S-BIAD866/8fa77246-13e1-49cf-af95-546af6ebe79a,21931
 idr0011/Plate16-Yellow-A.ome.zarr,S-BIAD866/8fb885c3-d7e8-4d17-9846-a39de4503e20,21821
 idr0011/Plate7-Green-B.ome.zarr,S-BIAD866/938bb94a-678e-4ce6-a74d-220e7766152b,21702
@@ -121,7 +118,6 @@ idr0011/Plate11-Red-B.ome.zarr,S-BIAD866/ba1196fa-946f-437c-84fe-ef4c1a585667,21
 idr0011/Plate2-Red-A.ome.zarr,S-BIAD866/ba665d0e-9a09-47d2-8fad-61d1495b00d3,21759
 idr0011/Plate11-Yellow-A.ome.zarr,S-BIAD866/bb4a5c35-16bb-4dfb-9f34-e2c47f7abaf3,21828
 idr0011/Plate5-Green-B.ome.zarr,S-BIAD866/bc4a95ef-a06a-4ea4-a66e-b3e1c07566ad,21799
-idr0011/Plate11-Blue-A.ome.zarr,S-BIAD866/bd01548b-da85-4a66-8422-7b16995fabba,21834
 idr0011/Plate5-Red-A.ome.zarr,S-BIAD866/bf49379e-97a8-41dd-8895-a4b1917ad1dd,21800
 idr0011/Plate2-Blue-B.ome.zarr,S-BIAD866/bf71fe55-d932-4cf7-8e8d-52a2aaf8104b,21756
 idr0011/Plate4-Blue-A.ome.zarr,S-BIAD866/c059eb71-d20b-43bb-9953-aeeb2aef60a4,21775

scripts/ngff_filesets/idr0013.csv

@@ -282,7 +282,6 @@ idr0013/LT0102_01.ome.zarr,S-BIAD865/8150983a-a101-4337-893b-c07667311d02,18723
 idr0013/LT0082_20.ome.zarr,S-BIAD865/817c423b-74c7-4fc2-909a-72f68a803c15,18664
 idr0013/LT0141_03.ome.zarr,S-BIAD865/8229f248-d02f-4542-91fd-2418e2ab4f18,18856
 idr0013/LT0012_29.ome.zarr,S-BIAD865/826e186f-054f-488f-9a7c-cd8538e66261,18387
-idr0013/LT0080_37.ome.zarr,S-BIAD865/8387705b-16bf-4b14-8884-426b0c16dfff,18655
 idr0013/LT0146_02.ome.zarr,S-BIAD865/83b4160b-a845-464b-9cdb-9c2289624773,18868
 idr0013/LT0017_01.ome.zarr,S-BIAD865/83cd1662-b9e6-4382-9aa1-693fcb755187,18404
 idr0013/LT0122_11.ome.zarr,S-BIAD865/83e49d4d-4351-4204-b712-1ff2d987ebc8,18791
@@ -453,7 +452,6 @@ idr0013/LT0087_03.ome.zarr,S-BIAD865/d7c6d23f-8d33-4d2d-95f2-bc863fbea88e,18676
 idr0013/LT0008_14.ome.zarr,S-BIAD865/d9d6a0e7-1e30-4e7b-a783-29b27096427b,18374
 idr0013/LT0092_39.ome.zarr,S-BIAD865/da4961c6-68fa-4d3a-9c90-91fd240f2e88,18694
 idr0013/LTValidMitosisSon384Plate03_02.ome.zarr,S-BIAD865/da513366-e228-41fc-9724-a696b2f1e7e6,22220
-idr0013/LT0066_23.ome.zarr,S-BIAD865/dab29e5a-d36f-430a-a9ff-7a1d6e4ce299,18568
 idr0013/LT0603_04.ome.zarr,S-BIAD865/db0f9fe9-e93e-48a3-80fe-2435c1385987,18956
 idr0013/LT0078_01.ome.zarr,S-BIAD865/db60a825-0eed-4063-b25c-b5e5aa6bbf73,18607
 idr0013/LTValidMitosisSon384Plate03_04.ome.zarr,S-BIAD865/dbc5c420-0a2b-4091-9583-ec1e4d51b776,22218
@@ -462,7 +460,6 @@ idr0013/LT0046_19.ome.zarr,S-BIAD865/de7d5c7b-fdfe-4e3f-aeb2-0170e9b6e1c0,18534
 idr0013/LTValidMitosisSon384Plate01_01.ome.zarr,S-BIAD865/deac2d7d-af15-434f-9c50-166610f37358,22228
 idr0013/LT0098_13.ome.zarr,S-BIAD865/df2c1ca1-9964-4249-9f12-e5b24d189c87,18712
 idr0013/LT0134_03.ome.zarr,S-BIAD865/df57d655-0970-4c79-9bed-6f29cb8f4ad7,18831
-idr0013/LT0103_13.ome.zarr,S-BIAD865/df947dfe-ed8f-4dda-a20a-fb9f3a717b47,18728
 idr0013/LT0170_08.ome.zarr,S-BIAD865/dfcc95f4-df2b-4b30-a767-de8a2a2888d3,18945
 idr0013/LT0158_01.ome.zarr,S-BIAD865/dfdcb304-ffe1-4844-bae3-9ee1ed4749a7,18937
 idr0013/LT0067_07.ome.zarr,S-BIAD865/e040af07-0f01-420d-901b-ed2332aa11b9,18569

scripts/ngff_filesets/idr0015.csv

@@ -27,7 +27,6 @@ idr0015/TARA_HCS1_H5_G100010623_G100010731--2014_06_20_18_48_17_chamber--U01--V0
 idr0015/TARA_HCS1_H5_G100010824_G100010826--2013_12_03_22_14_42_chamber--U01--V01.ome.zarr,S-BIAD861/54cff3b6-7fe5-40a0-bcfa-5116d9adcc0a,21171
 idr0015/TARA_HCS1_H5_G100009725_G100010454--2013_12_05_21_08_22_chamber--U01--V01.ome.zarr,S-BIAD861/56d9076c-5158-46dc-b143-5c2775c994b1,21151
 idr0015/TARA_HCS1_H5_G100004906_G100002201--2013_08_25_19_31_15_chamber--U00--V01.ome.zarr,S-BIAD861/60d83264-603f-42ed-a1c3-99f32e8929c6,21104
-idr0015/TARA_HCS1_H5_G100008060_G100008062--2013_11_03_22_51_32_chamber--U00--V01.ome.zarr,S-BIAD861/d69df538-4684-4b32-8ded-d2f2af43af9f,21118
 idr0015/TARA_HCS1_H5_G100011162_G100012868--2013_10_03_13_08_50_chamber--U01--V01.ome.zarr,S-BIAD861/679a8547-7557-465c-b849-eda09777061b,21177
 idr0015/TARA_HCS1_H5_G100008033_G100007130--2013_11_02_21_39_19_chamber--U00--V01.ome.zarr,S-BIAD861/67e274a4-78db-4ace-bb66-d2010ec9891b,21116
 idr0015/TARA_HCS1_H5_G100011162_G100012868--2013_10_03_13_08_50_chamber--U00--V01.ome.zarr,S-BIAD861/72132362-a994-4c04-a99d-7592f98e7f1a,21175
@@ -45,7 +44,6 @@ idr0015/TARA_HCS1_H5_G100008302_G100008304--2013_12_02_21_30_23_chamber--U01--V0
 idr0015/TARA_HCS1_H5_G100004339_G100004341--2013_09_27_15_24_28_chamber--U01--V01.ome.zarr,S-BIAD861/85a93558-19e3-4b44-a78d-c7aa44a4ccac,21102
 idr0015/TARA_HCS1_H5_G100002978_G100002980--2013_08_29_12_36_46_chamber--U01--V01.ome.zarr,S-BIAD861/85cfb488-18cb-42ac-85e3-905357e0d7a1,20305
 idr0015/TARA_HCS1_H5_G100002411_G100002481--2013_08_28_14_46_59_chamber--U00--V01.ome.zarr,S-BIAD861/8c82a757-231b-46e3-99e2-42b3378f9cd4,19301
-idr0015/TARA_HCS1_H5_G100010241_G100010731--2013_09_29_19_14_59_chamber--U00--V01.ome.zarr,S-BIAD861/0cc5dbe3-444a-4ea2-a335-b51cf89c1c53,21160
 idr0015/TARA_HCS1_H5_G100007887_G100007889--2013_10_29_19_56_21_chamber--U00--V01.ome.zarr,S-BIAD861/911efef5-ba9d-4872-8ffe-3222576a0ff8,21114
 idr0015/TARA_HCS1_H5_G100012537_G100012477--2013_10_01_12_30_33_chamber--U00--V01.ome.zarr,S-BIAD861/91d039ce-b037-4b5a-a975-8c0ecf883c6b,21176
 idr0015/TARA_HCS1_H5_G100010824_G100010826--2013_12_03_22_14_42_chamber--U00--V01.ome.zarr,S-BIAD861/977cc7ea-6629-4182-b704-ee7e4a2b5fd4,21169
@@ -64,7 +62,6 @@ idr0015/TARA_HCS1_H5_G100010173_G100010177--2014_06_24_12_25_12_chamber--U01--V0
 idr0015/TARA_HCS1_H5_G100008152_G100008154--2013_11_04_20_31_35_chamber--U00--V01.ome.zarr,S-BIAD861/c5dd76f8-2337-4c4c-bbab-37089bb1bff8,21120
 idr0015/TARA_HCS1_H5_G100002567_G100002568--2013_09_25_12_55_58_chamber--U01--V01.ome.zarr,S-BIAD861/c842d468-765d-4e7d-92b7-39a6f34b6722,20252
 idr0015/TARA_HCS1_H5_G100001988_G100001989--2013_09_23_19_42_50_chamber--U00--V01.ome.zarr,S-BIAD861/cd851edf-31c5-430d-b2a5-b55d010e2f6a,19269
-idr0015/TARA_HCS1_H5_G100007665_G100007576--2013_10_28_21_05_26_chamber--U00--V01.ome.zarr,S-BIAD861/1a29207c-d50b-48b7-a7c0-54c6252bfd9c,21112
 idr0015/TARA_HCS1_H5_G100003584_G100003586--2013_09_26_15_23_10_chamber--U00--V01.ome.zarr,S-BIAD861/d3838710-9476-43a2-9388-c3746f434c03,20901
 idr0015/TARA_HCS1_H5_G100012694_G100012776--2013_10_02_14_27_33_chamber--U00--V01.ome.zarr,S-BIAD861/d41b8d57-c366-429d-9f7b-92f209fb1c5a,21179
 idr0015/TARA_HCS1_H5_G100008236_G100008238--2013_11_06_21_52_31_chamber--U00--V01.ome.zarr,S-BIAD861/d5650cda-3a1c-4c78-a496-4b255994648f,21122

scripts/ngff_filesets/idr0016.csv

@@ -48,7 +48,6 @@ idr0016/25435.ome.zarr,S-BIAD851/197340ea-a1c1-4861-9a6e-60a4645eeccf,21337
 idr0016/24635.ome.zarr,S-BIAD851/199231ce-fee3-48da-bc9c-4dc0e10b86dc,23582
 idr0016/26791.ome.zarr,S-BIAD851/1a1f9a32-143b-40e4-af5b-e5b7e104b22d,21674
 idr0016/24303.ome.zarr,S-BIAD851/1b01fee2-121f-449e-85ee-4da316385ae2,23560
-idr0016/25585.ome.zarr,S-BIAD851/1b63ff26-391a-4b44-995c-83b7cbf5372f,21365
 idr0016/24759.ome.zarr,S-BIAD851/1c02f835-1b3a-4d03-b0c0-50704351f33c,21301
 idr0016/26138.ome.zarr,S-BIAD851/1c6c86a6-4ef1-4295-917e-a9d0ec95d19f,21534
 idr0016/25742.ome.zarr,S-BIAD851/1c920843-c565-4382-abcb-82836b2f4559,21456
@@ -63,7 +62,6 @@ idr0016/26126.ome.zarr,S-BIAD851/20ef52e7-0a63-4906-8f04-3dc48e4785ee,21530
 idr0016/24795.ome.zarr,S-BIAD851/21745efe-2354-4e6f-8819-c43c9df1f17c,21310
 idr0016/25378.ome.zarr,S-BIAD851/21c91f57-bc69-4752-9608-c00106233be6,21317
 idr0016/24796.ome.zarr,S-BIAD851/2269d214-4c90-41e7-b3f8-e5761067ada4,21311
-idr0016/24634.ome.zarr,S-BIAD851/22803be2-9732-41ab-b9bf-fcd37c3b3b84,21278
 idr0016/26135.ome.zarr,S-BIAD851/2446523c-bfc8-4eb6-bfc5-20cf092eb631,21533
 idr0016/24752.ome.zarr,S-BIAD851/24b4098a-0199-449d-bd9d-64be6c3eaf21,21294
 idr0016/25689.ome.zarr,S-BIAD851/24b71ccd-7130-4086-9a4a-fe7c0605c818,21395
@@ -78,7 +76,6 @@ idr0016/25857.ome.zarr,S-BIAD851/29ff05bc-8b1a-4ebe-8dff-0a6dc0ba200e,21465
 idr0016/24732.ome.zarr,S-BIAD851/2af60052-9e53-4da5-b29e-1d0eefaf2fdf,21286
 idr0016/24753.ome.zarr,S-BIAD851/2b8fac98-0676-437f-9d38-0690c66ebe59,21295
 idr0016/24296.ome.zarr,S-BIAD851/2c1d29f0-06db-4e19-8697-b5739e3f87a5,23556
-idr0016/24667.ome.zarr,S-BIAD851/2c49b893-ec6d-4329-9cc3-569b820075f2,23603
 idr0016/26786.ome.zarr,S-BIAD851/2d21a434-60ea-49fb-8605-d1b404845d6c,21673
 idr0016/25403.ome.zarr,S-BIAD851/2dccf3bc-6982-4db4-bcf8-2f805c3b637a,21323
 idr0016/24279.ome.zarr,S-BIAD851/2dfd445f-d086-413f-b3fe-8ae436cbaaca,21206
@@ -93,7 +90,6 @@ idr0016/25848.ome.zarr,S-BIAD851/338a137b-00d9-4ce5-812c-629f1d3dd6f1,21458
 idr0016/25708.ome.zarr,S-BIAD851/33982d7c-a20d-4907-8c5e-4525c652a05a,21403
 idr0016/24320.ome.zarr,S-BIAD851/36a023f2-ac7f-4f78-b354-ab65aa661365,23569
 idr0016/24683.ome.zarr,S-BIAD851/36c44c19-501c-4da5-a034-11444e1b4df7,23604
-idr0016/25909.ome.zarr,S-BIAD851/382abcd4-404b-4796-bbe2-b02fedcbb015,21476
 idr0016/24653.ome.zarr,S-BIAD851/3934e14f-c232-4897-9fdf-c4f65dd13ea0,21281
 idr0016/26744.ome.zarr,S-BIAD851/394e1774-49e8-4059-a6f7-11bcadd22e93,21659
 idr0016/26600.ome.zarr,S-BIAD851/3a5004fd-d706-4c34-bf30-0c525f3eff82,21573
@@ -123,7 +119,6 @@ idr0016/25931.ome.zarr,S-BIAD851/4683d944-900b-4275-be04-48d9fecc6b45,21486
 idr0016/25382.ome.zarr,S-BIAD851/46bd448d-67db-432a-abf1-350ad3ba63ab,21319
 idr0016/24688.ome.zarr,S-BIAD851/4719514f-c6e9-4483-ba20-24841d484b85,23608
 idr0016/25914.ome.zarr,S-BIAD851/474213e6-1c21-49cd-ab8d-105f9fc982c7,21480
-idr0016/25592.ome.zarr,S-BIAD851/481a1ae0-a492-451f-bf7d-fa2c106c7cf5,21369
 idr0016/26071.ome.zarr,S-BIAD851/4a234c7f-e05b-45fc-a3fa-f2dd5bafafa6,21522
 idr0016/25913.ome.zarr,S-BIAD851/4b363475-fb37-4916-a7e5-170567067875,21479
 idr0016/25588.ome.zarr,S-BIAD851/4c32a4c2-9fd8-457d-b978-4b07c87efcb4,21366
@@ -153,7 +148,6 @@ idr0016/26181.ome.zarr,S-BIAD851/58233716-27bb-4c29-af99-fe130b9c59f0,21539
 idr0016/25408.ome.zarr,S-BIAD851/5a0c5149-022a-4e06-81b4-ce9692b29eb7,21324
 idr0016/26783.ome.zarr,S-BIAD851/5ab27268-60b1-4fe3-a031-962ac31a25ba,21670
 idr0016/24515.ome.zarr,S-BIAD851/5ad6ed1e-b427-4703-b789-50c831547b0f,23575
-idr0016/25675.ome.zarr,S-BIAD851/5aec8bec-8573-44ec-9e9e-24fb81623fbe,21385
 idr0016/25667.ome.zarr,S-BIAD851/5cc48869-3a45-4d3f-a0b2-de099b5501f9,21383
 idr0016/26607.ome.zarr,S-BIAD851/5d3a4e15-6222-4dcc-8802-ee94525c40fc,21575
 idr0016/24295.ome.zarr,S-BIAD851/5fbf9fd7-6e18-4231-a381-a765a1ef537f,23555
@@ -393,7 +387,6 @@ idr0016/25944.ome.zarr,S-BIAD851/f68958ee-a3b6-45eb-bf8d-ccc19dc0213f,21492
 idr0016/24631.ome.zarr,S-BIAD851/f69ed1ae-87fd-43b4-a199-e8f57b2f668b,21276
 idr0016/24656.ome.zarr,S-BIAD851/f6c0b6fa-8056-44d9-af3b-3cc4a4c6fc52,23598
 idr0016/26611.ome.zarr,S-BIAD851/f84ffc46-1ae3-4e6e-b28e-99698c6cf3df,21577
-idr0016/25740.ome.zarr,S-BIAD851/f8583882-cfa6-4409-b452-50b849b1397e,21454
 idr0016/26216.ome.zarr,S-BIAD851/f86981dc-2582-405d-8040-cd54e83f7347,21545
 idr0016/25436.ome.zarr,S-BIAD851/f9c588e3-604e-4e57-8db9-79cd08a2fbf7,21338
 idr0016/25503.ome.zarr,S-BIAD851/f9ffa6a4-6f3b-4381-a9be-2cfa2fabc267,21343