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0mician committed May 13, 2024
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# The challenge

We ask you to classify the sequences (see dataset) using your pipeline
and send us your results. The classification will be evaluated using
the Taxonomy Release [MSL39](https://ictv.global/news/taxonomy_2023
"MSL39"). Importantly, we ask that your pipeline be <b>fully
reproducible</b> and that you make available the necessary code and
environment to run it. Multiple strategies exist, such as the creation
of virtual environments (venv, conda) or containers (Singularity,
Docker), and the pipeline should be made available via a git
repository (Github, Bitbucket). The results of your classification
will be further evaluated on metrics including reproducability, speed,
accuracy at different ranks, for different types of viruses, etc.
We ask you to classify a set of viral sequences using a bioinformatics
pipeline of your choice or design. The classification will be
evaluated using the Taxonomy Release
[MSL39](https://ictv.global/news/taxonomy_2023 "MSL39"). Importantly,
we ask that your pipeline be <b>fully reproducible</b> and that you
make available the necessary code and environment to run it. Multiple
strategies exist, such as the creation of virtual environments (venv,
conda) or containers (Singularity, Docker), and the code should be
made available via a git repository (Github, Bitbucket). The results
of your classification will be further evaluated on metrics including
reproducability, speed, accuracy at different ranks, for different
types of viruses, etc.

## In practice

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