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Efficiently interface Julia simulators via pyjulia #514

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merged 19 commits into from
Nov 23, 2021
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@yannikschaelte yannikschaelte commented Nov 6, 2021

  • Add pyabc.external.julia submodule for Julia calls via PyJulia.

fixes #493

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codecov-commenter commented Nov 6, 2021

Codecov Report

Merging #514 (e4e5629) into develop (e4fdc78) will decrease coverage by 0.15%.
The diff coverage is 82.27%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #514      +/-   ##
===========================================
- Coverage    88.44%   88.28%   -0.16%     
===========================================
  Files          122      125       +3     
  Lines         7353     7424      +71     
===========================================
+ Hits          6503     6554      +51     
- Misses         850      870      +20     
Impacted Files Coverage Δ
pyabc/__init__.py 100.00% <ø> (ø)
pyabc/external/__init__.py 100.00% <ø> (ø)
pyabc/model.py 85.45% <50.00%> (-3.01%) ⬇️
pyabc/external/julia/jl_pyjulia.py 82.35% <82.35%> (ø)
pyabc/external/julia/__init__.py 100.00% <100.00%> (ø)
pyabc/external/r/__init__.py 100.00% <100.00%> (ø)
pyabc/external/r/r_rpy2.py 94.36% <100.00%> (ø)
pyabc/weighted_statistics.py 92.06% <0.00%> (-3.18%) ⬇️
pyabc/sampler/mapping.py 95.00% <0.00%> (-2.50%) ⬇️
pyabc/sampler/redis_eps/work.py 84.70% <0.00%> (-2.36%) ⬇️
... and 1 more

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@yannikschaelte yannikschaelte self-assigned this Nov 10, 2021
@yannikschaelte yannikschaelte merged commit 0b8beda into develop Nov 23, 2021
@yannikschaelte yannikschaelte deleted the feature_jl branch November 23, 2021 16:27
@yannikschaelte yannikschaelte mentioned this pull request Dec 3, 2021
@yannikschaelte yannikschaelte mentioned this pull request Feb 23, 2022
EmadAlamoudi pushed a commit that referenced this pull request Jun 30, 2022
* add julia interface

* enable julia module pickling

* add julia tests

* install pyjulia

* tidy up demo example locs

* remove pickling req

* docs

* fix matplotlib int error

* docs

* docs

* stuff

* whatever

* link docs

* fixix

* fix typo

* test ipython write
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2 participants