logging when config #696
Workflow file for this run
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| name: Build Xmipp | |
| on: | |
| pull_request: | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: | |
| - 'ubuntu-latest' | |
| cuda: | |
| - {version: '11.8.0', method: 'network'} | |
| - {version: '12.2.2', method: 'network'} | |
| - {version: 'None'} | |
| compiler: | |
| - {cc: gcc, cxx: g++} | |
| include: | |
| - os: 'ubuntu-20.04' | |
| cuda: {version: '11.3.1', method: 'network'} | |
| compiler: {cc: gcc-9, cxx: g++-9, update-alternatives: True} | |
| - os: 'ubuntu-20.04' | |
| cuda: {version: '10.2.89', method: 'local'} | |
| compiler: {cc: gcc-8, cxx: g++-8, update-alternatives: True} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libfftw3-dev libopenmpi-dev libhdf5-dev libtiff5-dev libsqlite3-dev default-jdk git cmake openmpi-bin ${{ matrix.compiler.cc }} ${{ matrix.compiler.cxx }} | |
| - if: ${{matrix.compiler.update-alternatives}} | |
| run: | | |
| sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/${{ matrix.compiler.cc }} 128 | |
| sudo update-alternatives --install /usr/bin/g++ g++ /usr/bin/${{ matrix.compiler.cxx }} 128 | |
| - uses: actions/setup-python@main | |
| with: | |
| python-version: '3.9.15' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install numpy | |
| - uses: Jimver/cuda-toolkit@master | |
| if: matrix.cuda.version != 'None' | |
| id: cuda-toolkit | |
| with: | |
| cuda: ${{ matrix.cuda.version }} | |
| method: ${{ matrix.cuda.method }} | |
| sub-packages: ${{ matrix.cuda.method=='network' && '["nvcc", "toolkit"]' || '[]' }} # Fake ternary operator | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.head_ref }} | |
| - name: Compile Xmipp with all dependencies in branch ${{ github.head_ref }} (if such branch exists, default is devel) | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref }} | |
| SEND_INSTALLATION_STATISTICS: 'OFF' | |
| run: | | |
| ./xmipp all -b $BRANCH_NAME --keep-output || (cat compilation.log && false) | |
| - name: Cat | |
| run: cat xmipp.conf |