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First stable Flexutils-Toolkit release #5

Merged
merged 93 commits into from
Feb 1, 2024
Merged

First stable Flexutils-Toolkit release #5

merged 93 commits into from
Feb 1, 2024

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DavidHerreros
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PR to prepare devel branch for the first stable release of Flexutils-Toolkit

DavidHerreros and others added 30 commits June 30, 2023 09:15
@DavidHerreros
New homosiren and implementation of TF data pipeline
41b57db
@DavidHerreros
Better filename for decoded map
6e5966c
@DavidHerreros
Network data generation now uses the new tf.data pipeline from Tensor…
1d982e0 
…flow
@DavidHerreros
Merge branch 'devel' into tf_datasets
a32e811
@DavidHerreros
Look for exact match in grep
e9d525d
@DavidHerreros
Look for exact match in grep
dc5884c
@DavidHerreros
Batches now generated by tf.data api instead of coming from the seque…
3aaa604 
…nce generator
@DavidHerreros
Soft roll back to previous implementation
6797a51
@DavidHerreros
Back to sequence generator
0cd133e
@DavidHerreros
Back to previous generation of datasets
502069b
@DavidHerreros
Back to previous generation of datasets
b8cd85c
@DavidHerreros
Fixed datasets generation
0e1b301
@DavidHerreros
Training based on epochs or max number of seen samples
c140b9a
@DavidHerreros
Remove duplicated epoch argument
0716042
@DavidHerreros
Fix typo
63a9ca0
@DavidHerreros
Allow automatic build for flexconsensus
a34b667
@DavidHerreros
Fix flexconsensus shape inferred from data to allow loading weights
1645e96
@DavidHerreros
Do not install cupy and skuda for now
4effe74
@DavidHerreros
Fix bug related to scikit-learn version
1a76f2f
@DavidHerreros
Fix installation of older versions
e329e1c
@DavidHerreros
Allow resuming training through checkpoints
74f32c1
@DavidHerreros
Tensorboard and Checkpoint callbacks during training
ce43f9b
@DavidHerreros
Tensorboard visualization of latent spaces
b5d83a6
@DavidHerreros
Limit the number of threads to 1 when using KMeans to avoid possible …
71aaf74 
…errors
@DavidHerreros
Create checkpoint and log paths before calling fit function
73bf2bb
@DavidHerreros
Create checkpoint and log paths before calling fit function
049aaeb
@pconesa
Multiresolution for HomoSIREN
f7ded14
@DavidHerreros
Merge remote-tracking branch 'origin/homosiren_datasets' into tf_data…
68cbc46 
…sets

# Conflicts:
#	toolkit/tensorflow_toolkit/datasets/dataset_template.py
@DavidHerreros
Downsample images method
9713eac
@DavidHerreros
New DeepPose method
d1bc1be
@DavidHerreros
Fix equation
7e062d1
@DavidHerreros
Fix FlexConsensus architecture
aecf0ed
@DavidHerreros
Several HetSIREN improvements (deconvolutions, DeepConv architecture,…
2f8fe52 
… TV and MSE losses, multiresolution)
@DavidHerreros
Merge remote-tracking branch 'origin/new_installation' into new_insta…
6a05df1 
…llation
@DavidHerreros
New version of Tensorflow and Open3D installation
e6ef47f
@DavidHerreros
Zernike3Deep clashes cost added
8b03253
@DavidHerreros
Preparing stable release
b443ab8
@DavidHerreros
Fix predict when using Wiener for CTF
a2d1b15
@DavidHerreros
Blur filters imports
d3c60d6
@DavidHerreros
Coloring and cuda checks
71eaa94
@DavidHerreros
Adjust Python version for Tensorflow 2.15
3827f82
@DavidHerreros
Performance improvement for new Zernike3Deep when model is not used
92a6d52
@DavidHerreros
Update README with new dependencies
85d8e84
@DavidHerreros
Add GitHub actions
ed7a1dd
@DavidHerreros
Change name typo
79d5bd5
@DavidHerreros
Fix CUDA version in actions
97fc894
@DavidHerreros
Add eval conda in actions
bf91bbc
@DavidHerreros
Do not clone in actions
37375de
@DavidHerreros
Clone in testRepo
e95895c
@DavidHerreros
Change directory
f5e8fa2
@DavidHerreros
Change directory
9d7a308
@DavidHerreros
Only install
d63264e
@DavidHerreros
Only install
15c1e46
@DavidHerreros
Only install
7fd6069
@DavidHerreros
Only install
38b06af
@DavidHerreros
Only install
adeb89f
@DavidHerreros
Only install
c64ae47
@DavidHerreros
Remove GitHub actions
36ad8fe
@DavidHerreros DavidHerreros merged commit 0f445ff into devel Feb 1, 2024
@DavidHerreros DavidHerreros deleted the new_installation branch February 1, 2024 14:18
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2 participants
@DavidHerreros @pconesa