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nf-tests through workflow functional
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@@ -7,4 +7,6 @@ testing/ | |
| testing* | ||
| *.pyc | ||
| .nf-tests/ | ||
| .nf-test/ | ||
| .nf-test.log | ||
| nf-test-checklist.tsv | ||
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| #mpa_vJan21_CHOCOPhlAnSGB_202103 | ||
| #<metaphlan command> | ||
| #19048 reads processed | ||
| #SampleID Metaphlan_Analysis | ||
| #clade_name NCBI_tax_id relative_abundance | ||
| k__Bacteria 2 100.0 | ||
| k__Bacteria|p__Actinobacteria 2|201174 94.8922 | ||
| k__Bacteria|p__Proteobacteria 2|1224 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria 2|201174|1760 94.8922 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 2|1224|28216 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales 2|201174|1760|85007 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales 2|201174|1760|85006 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales 2|1224|28216|80840 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 2|201174|1760|2037 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae 2|201174|1760|85007|1653 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae 2|201174|1760|85006|1268 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae 2|1224|28216|80840|119060 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae 2|201174|1760|2037|2049 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium 2|201174|1760|85007|1653|1716 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia 2|201174|1760|85006|1268|32207 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia 2|1224|28216|80840|119060|47670 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces 2|201174|1760|2037|2049|1654 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_matruchotii 2|201174|1760|85007|1653|1716|43768 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_dentocariosa 2|201174|1760|85006|1268|32207|2047 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia|s__Lautropia_dentalis 2|1224|28216|80840|119060|47670|2490857 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces|s__Actinomyces_SGB15893 2|201174|1760|2037|2049|1654|34019849 1.16352 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| #mpa_vJan21_CHOCOPhlAnSGB_202103 | ||
| #<metaphlan command> | ||
| #19048 reads processed | ||
| #SampleID Metaphlan_Analysis | ||
| #clade_name NCBI_tax_id relative_abundance | ||
| k__Bacteria 2 100.0 | ||
| k__Bacteria|p__Actinobacteria 2|201174 94.8922 | ||
| k__Bacteria|p__Proteobacteria 2|1224 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria 2|201174|1760 94.8922 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria 2|1224|28216 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales 2|201174|1760|85007 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales 2|201174|1760|85006 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales 2|1224|28216|80840 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales 2|201174|1760|2037 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae 2|201174|1760|85007|1653 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae 2|201174|1760|85006|1268 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae 2|1224|28216|80840|119060 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae 2|201174|1760|2037|2049 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium 2|201174|1760|85007|1653|1716 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia 2|201174|1760|85006|1268|32207 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia 2|1224|28216|80840|119060|47670 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces 2|201174|1760|2037|2049|1654 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_matruchotii 2|201174|1760|85007|1653|1716|43768 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_dentocariosa 2|201174|1760|85006|1268|32207|2047 40.15913 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia|s__Lautropia_dentalis 2|1224|28216|80840|119060|47670|2490857 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces|s__Actinomyces_SGB15893 2|201174|1760|2037|2049|1654|34019849 1.16352 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_matruchotii|t__SGB17007 2|201174|1760|85007|1653|1716|43768|SGB17007 53.56955 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_dentocariosa|t__SGB16988_group 2|201174|1760|85006|1268|32207|2047|SGB16988_group 40.15913 k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC08A08,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC071F11,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC058E10,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC064D08,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC067H10,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC065G12,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC036D11,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC069C01,k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_sp_HMSC065D02 | ||
| k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Burkholderiaceae|g__Lautropia|s__Lautropia_dentalis|t__SGB13164 2|1224|28216|80840|119060|47670|2490857|SGB13164 5.1078 | ||
| k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces|s__Actinomyces_SGB15893|t__SGB15893 2|201174|1760|2037|2049|1654|34019849|SGB15893 1.16352 |
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