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Fixed nf-tests, restructured test-data, and started fixing failing tests #3

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Fixed nf-tests, restructured test-data, and started fixing failing tests

Fixed nf-tests, restructured test-data, and started fixing failing tests #3

Triggered via pull request April 24, 2024 17:52
@CarsonJMCarsonJM
opened #18
CarsonJM:development
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61 errors and 81 warnings
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-23.04
Process completed with exit code 1.
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-23.04
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/biobakerymgx/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/biobakerymgx/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/biobakerymgx/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/readcounts/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/humann/downloadchocophlandb/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/kneaddata/database/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/database/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/kneaddata/database/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/humann/downloadunirefdb/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/metaphlan/sgbtogtdbprofile/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/metaphlan/mergemetaphlantables/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/metaphlan/makedb/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/metaphlan/metaphlan/tests/main.nf.test docker NF-23.04
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-latest-everything
Process completed with exit code 1.
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-latest-everything
Process completed with exit code 1.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/metaphlan/sgbtogtdbprofile/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/metaphlan/mergemetaphlantables/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/readcounts/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/humann/downloadunirefdb/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/humann/downloadchocophlandb/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/biobakerymgx/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
workflows/biobakerymgx/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/biobakerymgx/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/kneaddata/database/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/local/kneaddata/database/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/kneaddata/database/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
modules/nf-core/metaphlan/makedb/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/metaphlan/metaphlan/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/main.nf.test docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
confirm-pass
Process completed with exit code 1.
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/biobakerymgx/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
workflows/biobakerymgx/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/kneaddata/readcounts/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/kneaddata/readcounts/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/humann/downloadchocophlandb/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/humann/downloadchocophlandb/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/kneaddata/database/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/kneaddata/database/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/humann/downloadunirefdb/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/humann/downloadunirefdb/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/metaphlan/sgbtogtdbprofile/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/metaphlan/sgbtogtdbprofile/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/metaphlan/mergemetaphlantables/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/metaphlan/mergemetaphlantables/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/multiqc/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/metaphlan/makedb/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/metaphlan/makedb/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/fastqc/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/metaphlan/metaphlan/tests/main.nf.test docker NF-23.04
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/metaphlan/metaphlan/tests/main.nf.test docker NF-23.04
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/metaphlan_db_provided.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/metaphlan/sgbtogtdbprofile/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/metaphlan/sgbtogtdbprofile/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/metaphlan/mergemetaphlantables/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/metaphlan/mergemetaphlantables/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/kneaddata/readcounts/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/kneaddata/readcounts/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/humann/downloadunirefdb/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/humann/downloadunirefdb/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/kneaddata/kneaddata/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/humann/downloadchocophlandb/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/humann/downloadchocophlandb/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
workflows/biobakerymgx/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
workflows/biobakerymgx/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/local/kneaddata/database/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/local/kneaddata/database/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/metaphlan/makedb/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/metaphlan/makedb/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/local/fastq_read_preprocessing_kneaddata/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
modules/nf-core/metaphlan/metaphlan/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
modules/nf-core/metaphlan/metaphlan/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/main.nf.test docker NF-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
subworkflows/local/fastq_read_taxonomy_metaphlan/tests/main.nf.test docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23