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1. pascient pascient Public

   Forked from Genentech/pascient

   Codes for paper: Learning multi-cellular representations of single-cell transcriptomics data enables characterization of patient-level disease states

   Jupyter Notebook

2. scEval scEval Public

   Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.

   Jupyter Notebook 51 8

3. MuSe-GNN MuSe-GNN Public

   [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"

   Python 26

4. scELMo scELMo Public

   Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis

   Jupyter Notebook 11 2

5. BAITSAO BAITSAO Public

   A foundation model for drug synergy analysis

   Python 3 1

6. Geneverse Geneverse Public

   [EMNLP 2024] This is the official code repo for the paper: Geneverse: A collection of Open-source Multimodal Large Language Models for Genomic and Proteomic Research.

   Python 7 2