minimum coverage call

[rodrigopsav]

Hello,
Is there any flag to specify minimum coverage for variant calling?

Thanks

[zhengzhenxian]

Hi,

We have not exposed the --min_coverage option for users now, you might need to modify two lines(https://github.com/HKU-BAL/Clair3/blob/main/shared/param_p.py#L21 and https://github.com/HKU-BAL/Clair3/blob/main/shared/param_f.py#L18) to set the minimum coverage. We will add the min_coverage option in the next release.

[aquaskyline]

Thanks for asking, as we have collected multiple requests on this, we will expose --min_coverage in the next revision v0.1-r11.

[rodrigopsav]

Thanks for the answer!

[aquaskyline]

Added in v0.1-r11.