redo package structure

src/main/java/util/annotations/UnitTag.java → src/main/java/gov/hhs/aspr/ms/util/annotations/UnitTag.java

@@ -1,4 +1,4 @@
-package util.annotations;
+package gov.hhs.aspr.ms.util.annotations;
 
 public enum UnitTag {
 	/*

src/main/java/util/annotations/UnitTestConstructor.java → src/main/java/gov/hhs/aspr/ms/util/annotations/UnitTestConstructor.java

@@ -1,4 +1,4 @@
-package util.annotations;
+package gov.hhs.aspr.ms.util.annotations;
 
 import java.lang.annotation.Documented;
 import java.lang.annotation.ElementType;

src/main/java/util/annotations/UnitTestField.java → src/main/java/gov/hhs/aspr/ms/util/annotations/UnitTestField.java

@@ -1,4 +1,4 @@
-package util.annotations;
+package gov.hhs.aspr.ms.util.annotations;
 
 import java.lang.annotation.Documented;
 import java.lang.annotation.ElementType;

src/main/java/util/annotations/UnitTestForCoverage.java → src/main/java/gov/hhs/aspr/ms/util/annotations/UnitTestForCoverage.java

@@ -1,4 +1,4 @@
-package util.annotations;
+package gov.hhs.aspr.ms.util.annotations;
 
 import java.lang.annotation.Documented;
 import java.lang.annotation.ElementType;

src/main/java/util/annotations/UnitTestMethod.java → src/main/java/gov/hhs/aspr/ms/util/annotations/UnitTestMethod.java

@@ -1,4 +1,4 @@
-package util.annotations;
+package gov.hhs.aspr.ms.util.annotations;
 
 import java.lang.annotation.Documented;
 import java.lang.annotation.ElementType;

src/main/java/util/combinatorics/TupleGenerator.java → src/main/java/gov/hhs/aspr/ms/util/combinatorics/TupleGenerator.java

@@ -1,4 +1,4 @@
-package util.combinatorics;
+package gov.hhs.aspr.ms.util.combinatorics;
 
 import java.util.ArrayList;
 import java.util.List;

src/main/java/util/delaunay/GeoDelaunaySolver.java → src/main/java/gov/hhs/aspr/ms/util/delaunay/GeoDelaunaySolver.java

@@ -1,4 +1,4 @@
-package util.delaunay;
+package gov.hhs.aspr.ms.util.delaunay;
 
 import java.util.ArrayList;
 import java.util.Arrays;
@@ -10,10 +10,10 @@
 import org.apache.commons.math3.util.FastMath;
 import org.apache.commons.math3.util.Pair;
 
-import util.dimensiontree.VolumetricDimensionTree;
-import util.earth.LatLon;
-import util.vector.MutableVector3D;
-import util.vector.Vector3D;
+import gov.hhs.aspr.ms.util.dimensiontree.VolumetricDimensionTree;
+import gov.hhs.aspr.ms.util.earth.LatLon;
+import gov.hhs.aspr.ms.util.vector.MutableVector3D;
+import gov.hhs.aspr.ms.util.vector.Vector3D;
 
 public class GeoDelaunaySolver<T> {
 

src/main/java/util/delaunay/PlanarDelaunaySolver.java → src/main/java/gov/hhs/aspr/ms/util/delaunay/PlanarDelaunaySolver.java

@@ -1,4 +1,4 @@
-package util.delaunay;
+package gov.hhs.aspr.ms.util.delaunay;
 
 import java.util.ArrayList;
 import java.util.Arrays;
@@ -10,10 +10,10 @@
 import org.apache.commons.math3.util.FastMath;
 import org.apache.commons.math3.util.Pair;
 
-import util.dimensiontree.VolumetricDimensionTree;
-import util.spherical.Chirality;
-import util.vector.MutableVector2D;
-import util.vector.Vector2D;
+import gov.hhs.aspr.ms.util.dimensiontree.VolumetricDimensionTree;
+import gov.hhs.aspr.ms.util.spherical.Chirality;
+import gov.hhs.aspr.ms.util.vector.MutableVector2D;
+import gov.hhs.aspr.ms.util.vector.Vector2D;
 
 public class PlanarDelaunaySolver<T> {
 

src/main/java/util/dimensiontree/DimensionTree.java → src/main/java/gov/hhs/aspr/ms/util/dimensiontree/DimensionTree.java

@@ -1,4 +1,4 @@
-package util.dimensiontree;
+package gov.hhs.aspr.ms.util.dimensiontree;
 
 import java.util.ArrayList;
 import java.util.Arrays;
@@ -9,7 +9,7 @@
 
 import org.apache.commons.math3.util.FastMath;
 
-import util.errors.ContractException;
+import gov.hhs.aspr.ms.util.errors.ContractException;
 
 /**
  * <p>

src/main/java/util/dimensiontree/DimensionTreeError.java → src/main/java/gov/hhs/aspr/ms/util/dimensiontree/DimensionTreeError.java

@@ -1,7 +1,7 @@
-package util.dimensiontree;
+package gov.hhs.aspr.ms.util.dimensiontree;
 
-import util.errors.ContractError;
-import util.errors.ContractException;
+import gov.hhs.aspr.ms.util.errors.ContractError;
+import gov.hhs.aspr.ms.util.errors.ContractException;
 
 /**
  * An enumeration supporting {@link ContractException} that acts as a general

src/main/java/util/dimensiontree/VolumetricDimensionTree.java → src/main/java/gov/hhs/aspr/ms/util/dimensiontree/VolumetricDimensionTree.java

@@ -1,4 +1,4 @@
-package util.dimensiontree;
+package gov.hhs.aspr.ms.util.dimensiontree;
 
 import java.util.ArrayList;
 import java.util.Arrays;

src/main/java/util/earth/Earth.java → src/main/java/gov/hhs/aspr/ms/util/earth/Earth.java

@@ -1,8 +1,8 @@
-package util.earth;
+package gov.hhs.aspr.ms.util.earth;
 
 import org.apache.commons.math3.util.FastMath;
 
-import util.vector.Vector3D;
+import gov.hhs.aspr.ms.util.vector.Vector3D;
 
 /**
  * A spherical geo-model for converting various coordinate representations and

src/main/java/util/earth/EarthGrid.java → src/main/java/gov/hhs/aspr/ms/util/earth/EarthGrid.java

@@ -1,10 +1,10 @@
-package util.earth;
+package gov.hhs.aspr.ms.util.earth;
 
 import org.apache.commons.math3.util.FastMath;
 
-import util.vector.MutableVector3D;
-import util.vector.Vector2D;
-import util.vector.Vector3D;
+import gov.hhs.aspr.ms.util.vector.MutableVector3D;
+import gov.hhs.aspr.ms.util.vector.Vector2D;
+import gov.hhs.aspr.ms.util.vector.Vector3D;
 
 /**
  * A utility class for converting (x,y) two dimensional grid coordinates to and

src/main/java/util/earth/LatLon.java → src/main/java/gov/hhs/aspr/ms/util/earth/LatLon.java

@@ -1,4 +1,4 @@
-package util.earth;
+package gov.hhs.aspr.ms.util.earth;
 
 import net.jcip.annotations.Immutable;
 

src/main/java/util/earth/LatLonAlt.java → src/main/java/gov/hhs/aspr/ms/util/earth/LatLonAlt.java

@@ -1,6 +1,6 @@
-package util.earth;
+package gov.hhs.aspr.ms.util.earth;
 
-import util.vector.Vector3D;
+import gov.hhs.aspr.ms.util.vector.Vector3D;
 
 public class LatLonAlt {
 

src/main/java/util/errors/ContractError.java → src/main/java/gov/hhs/aspr/ms/util/errors/ContractError.java

@@ -1,5 +1,5 @@
 
-package util.errors;
+package gov.hhs.aspr.ms.util.errors;
 
 /**
  * Marker interface for the descriptions of runtime exceptions where the source

src/main/java/util/errors/ContractException.java → src/main/java/gov/hhs/aspr/ms/util/errors/ContractException.java

@@ -1,4 +1,4 @@
-package util.errors;
+package gov.hhs.aspr.ms.util.errors;
 
 /**
  * A {@link RuntimeException} that indicates that the cause of the error as a

src/main/java/util/geolocator/GeoLocator.java → src/main/java/gov/hhs/aspr/ms/util/geolocator/GeoLocator.java

@@ -1,4 +1,4 @@
-package util.geolocator;
+package gov.hhs.aspr.ms.util.geolocator;
 
 import java.util.ArrayList;
 import java.util.Comparator;
@@ -9,11 +9,11 @@
 import org.apache.commons.math3.util.FastMath;
 import org.apache.commons.math3.util.Pair;
 
-import util.dimensiontree.DimensionTree;
-import util.earth.Earth;
-import util.earth.LatLonAlt;
-import util.vector.Vector2D;
-import util.vector.Vector3D;
+import gov.hhs.aspr.ms.util.dimensiontree.DimensionTree;
+import gov.hhs.aspr.ms.util.earth.Earth;
+import gov.hhs.aspr.ms.util.earth.LatLonAlt;
+import gov.hhs.aspr.ms.util.vector.Vector2D;
+import gov.hhs.aspr.ms.util.vector.Vector3D;
 
 /**
  * A generics-based utility class for managing point locations on a spherical

src/main/java/util/graph/Graph.java → src/main/java/gov/hhs/aspr/ms/util/graph/Graph.java

@@ -1,4 +1,4 @@
-package util.graph;
+package gov.hhs.aspr.ms.util.graph;
 
 import java.util.List;
 

src/main/java/util/graph/GraphDepthEvaluator.java → src/main/java/gov/hhs/aspr/ms/util/graph/GraphDepthEvaluator.java

@@ -1,4 +1,4 @@
-package util.graph;
+package gov.hhs.aspr.ms.util.graph;
 
 import java.util.ArrayList;
 import java.util.LinkedHashMap;

src/main/java/util/graph/Graphs.java → src/main/java/gov/hhs/aspr/ms/util/graph/Graphs.java

@@ -1,4 +1,4 @@
-package util.graph;
+package gov.hhs.aspr.ms.util.graph;
 
 import java.util.ArrayList;
 import java.util.LinkedHashMap;
@@ -9,8 +9,8 @@
 import java.util.Optional;
 import java.util.Set;
 
-import util.path.Path;
-import util.path.Paths;
+import gov.hhs.aspr.ms.util.path.Path;
+import gov.hhs.aspr.ms.util.path.Paths;
 
 public final class Graphs {
 

src/main/java/util/graph/MutableGraph.java → src/main/java/gov/hhs/aspr/ms/util/graph/MutableGraph.java

@@ -1,4 +1,4 @@
-package util.graph;
+package gov.hhs.aspr.ms.util.graph;
 
 import java.util.ArrayList;
 import java.util.LinkedHashMap;

src/main/java/util/indexer/Indexer2.java → src/main/java/gov/hhs/aspr/ms/util/indexer/Indexer2.java

@@ -1,7 +1,7 @@
-package util.indexer;
+package gov.hhs.aspr.ms.util.indexer;
 
+import gov.hhs.aspr.ms.util.errors.ContractException;
 import net.jcip.annotations.ThreadSafe;
-import util.errors.ContractException;
 
 /**
  * A thread safe, immutable index converter that supports treating a 2D array as

src/main/java/util/indexer/Indexer3.java → src/main/java/gov/hhs/aspr/ms/util/indexer/Indexer3.java

@@ -1,6 +1,6 @@
-package util.indexer;
+package gov.hhs.aspr.ms.util.indexer;
 
-import util.errors.ContractException;
+import gov.hhs.aspr.ms.util.errors.ContractException;
 
 /**
  * A thread safe, immutable index converter that supports treating a 3D array as

src/main/java/util/indexer/Indexer4.java → src/main/java/gov/hhs/aspr/ms/util/indexer/Indexer4.java

@@ -1,6 +1,6 @@
-package util.indexer;
+package gov.hhs.aspr.ms.util.indexer;
 
-import util.errors.ContractException;
+import gov.hhs.aspr.ms.util.errors.ContractException;
 
 /**
  * A thread safe, immutable index converter that supports treating a 4D array as

src/main/java/util/indexer/Indexer5.java → src/main/java/gov/hhs/aspr/ms/util/indexer/Indexer5.java

@@ -1,6 +1,6 @@
-package util.indexer;
+package gov.hhs.aspr.ms.util.indexer;
 
-import util.errors.ContractException;
+import gov.hhs.aspr.ms.util.errors.ContractException;
 
 /**
  * A thread safe, immutable index converter that supports treating a 5D array as

src/main/java/util/indexer/IndexerError.java → src/main/java/gov/hhs/aspr/ms/util/indexer/IndexerError.java

@@ -1,7 +1,7 @@
-package util.indexer;
+package gov.hhs.aspr.ms.util.indexer;
 
-import util.errors.ContractError;
-import util.errors.ContractException;
+import gov.hhs.aspr.ms.util.errors.ContractError;
+import gov.hhs.aspr.ms.util.errors.ContractException;
 
 /**
  * An enumeration supporting {@link ContractException} that acts as a general

src/main/java/util/maps/MapReindexer.java → src/main/java/gov/hhs/aspr/ms/util/maps/MapReindexer.java

@@ -1,4 +1,4 @@
-package util.maps;
+package gov.hhs.aspr.ms.util.maps;
 
 import java.util.LinkedHashMap;
 import java.util.Map;

src/main/java/util/meta/classdependency/classgraph/ClassGraphDriver.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/ClassGraphDriver.java

@@ -1,14 +1,14 @@
-package util.meta.classdependency.classgraph;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph;
 
 import java.io.IOException;
 import java.nio.file.Path;
 import java.nio.file.Paths;
 
-import util.meta.classdependency.classgraph.reports.CircularClassDependencyReport;
-import util.meta.classdependency.classgraph.reports.CircularPackageDependencyReport;
-import util.meta.classdependency.classgraph.reports.WildCardReport;
-import util.meta.classdependency.classgraph.support.ClassDependencyScan;
-import util.meta.classdependency.classgraph.support.ClassDependencyScanner;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.reports.CircularClassDependencyReport;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.reports.CircularPackageDependencyReport;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.reports.WildCardReport;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.ClassDependencyScan;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.ClassDependencyScanner;
 
 public final class ClassGraphDriver {
 

src/main/java/util/meta/classdependency/classgraph/reports/CircularClassDependencyReport.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/reports/CircularClassDependencyReport.java

@@ -1,17 +1,17 @@
-package util.meta.classdependency.classgraph.reports;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.reports;
 
 import java.util.LinkedHashSet;
 import java.util.List;
 import java.util.Optional;
 import java.util.Set;
 import java.util.stream.Collectors;
 
-import util.graph.Graph;
-import util.graph.GraphDepthEvaluator;
-import util.graph.Graphs;
-import util.graph.MutableGraph;
-import util.meta.classdependency.classgraph.support.ClassDependencyScan;
-import util.meta.classdependency.classgraph.support.JavaDependency;
+import gov.hhs.aspr.ms.util.graph.Graph;
+import gov.hhs.aspr.ms.util.graph.GraphDepthEvaluator;
+import gov.hhs.aspr.ms.util.graph.Graphs;
+import gov.hhs.aspr.ms.util.graph.MutableGraph;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.ClassDependencyScan;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.JavaDependency;
 
 public final class CircularClassDependencyReport {
 	private CircularClassDependencyReport() {

src/main/java/util/meta/classdependency/classgraph/reports/CircularPackageDependencyReport.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/reports/CircularPackageDependencyReport.java

@@ -1,17 +1,17 @@
-package util.meta.classdependency.classgraph.reports;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.reports;
 
 import java.util.LinkedHashSet;
 import java.util.List;
 import java.util.Optional;
 import java.util.Set;
 import java.util.stream.Collectors;
 
-import util.graph.Graph;
-import util.graph.GraphDepthEvaluator;
-import util.graph.Graphs;
-import util.graph.MutableGraph;
-import util.meta.classdependency.classgraph.support.ClassDependencyScan;
-import util.meta.classdependency.classgraph.support.JavaDependency;
+import gov.hhs.aspr.ms.util.graph.Graph;
+import gov.hhs.aspr.ms.util.graph.GraphDepthEvaluator;
+import gov.hhs.aspr.ms.util.graph.Graphs;
+import gov.hhs.aspr.ms.util.graph.MutableGraph;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.ClassDependencyScan;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.JavaDependency;
 
 public final class CircularPackageDependencyReport {
 	private CircularPackageDependencyReport() {

src/main/java/util/meta/classdependency/classgraph/reports/WildCardReport.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/reports/WildCardReport.java

@@ -1,13 +1,13 @@
-package util.meta.classdependency.classgraph.reports;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.reports;
 
 import java.util.ArrayList;
 import java.util.LinkedHashMap;
 import java.util.List;
 import java.util.Map;
 
-import util.meta.classdependency.classgraph.support.ClassDependencyScan;
-import util.meta.classdependency.classgraph.support.JavaDependency;
-import util.meta.classdependency.classgraph.support.JavaRef;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.ClassDependencyScan;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.JavaDependency;
+import gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support.JavaRef;
 
 public final class WildCardReport {
 	private WildCardReport() {

src/main/java/util/meta/classdependency/classgraph/support/ClassDependencyScan.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/support/ClassDependencyScan.java

@@ -1,4 +1,4 @@
-package util.meta.classdependency.classgraph.support;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support;
 
 import java.util.LinkedHashSet;
 import java.util.Set;

src/main/java/util/meta/classdependency/classgraph/support/ClassDependencyScanner.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/support/ClassDependencyScanner.java

@@ -1,4 +1,4 @@
-package util.meta.classdependency.classgraph.support;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support;
 
 import java.io.IOException;
 import java.nio.file.FileVisitResult;

src/main/java/util/meta/classdependency/classgraph/support/JavaDependency.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/support/JavaDependency.java

@@ -1,4 +1,4 @@
-package util.meta.classdependency.classgraph.support;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support;
 
 import net.jcip.annotations.Immutable;
 

src/main/java/util/meta/classdependency/classgraph/support/JavaRef.java → src/main/java/gov/hhs/aspr/ms/util/meta/classdependency/classgraph/support/JavaRef.java

@@ -1,4 +1,4 @@
-package util.meta.classdependency.classgraph.support;
+package gov.hhs.aspr.ms.util.meta.classdependency.classgraph.support;
 
 import net.jcip.annotations.Immutable;