[pre-commit.ci] pre-commit autoupdate #1761
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run Tests | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| tests: | |
| env: | |
| ENV_NAME: tests | |
| PYTHON: ${{ matrix.python-version }} | |
| WITH_SUDO: yes | |
| OS: ${{ matrix.os }} | |
| # use localhost for the host here because we are running the job on the VM. | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| name: Testing | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8, 3.9, "3.10"] | |
| services: | |
| postgres: | |
| image: postgres:10.8 | |
| env: | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| # will assign a random free host port | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a healthcheck | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| redis: | |
| image: redis | |
| env: | |
| REDIS_HOST: redishost | |
| ports: | |
| - 6379:6379 | |
| options: --entrypoint redis-server --network-alias $REDIS_HOST -v /data:/data --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| fetch-depth: 1 | |
| - name: Setup Minimamba | |
| uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ env.PYTHON }} | |
| environment-file: ci/${{ env.ENV_NAME }}.yaml | |
| activate-environment: ${{ env.ENV_NAME }} | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != ${{ env.PYTHON }} ]]; then | |
| exit 1; | |
| fi | |
| - name: Install | |
| run: | | |
| pip install --no-deps . | |
| - name: Setup postgres | |
| run: | | |
| export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB | |
| psql $POSTGRES_URL -c 'create database hera_mc_test;' | |
| psql $POSTGRES_URL -c 'create database hera_mc;' | |
| psql $POSTGRES_URL -c "create user hera with password 'hera';" | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Upgrade Database Schema | |
| run: | | |
| mkdir ~/.hera_mc | |
| cp ci/example_config.json ~/.hera_mc/mc_config.json | |
| alembic upgrade head | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Initialize Redis | |
| # Grab the name of the redis container with bash magic | |
| # stop the container, replace the dump file with our save file | |
| # add the IP to the hosts file to preserve some hardcoded defaults | |
| run: | | |
| DOCKER_NAME=`/usr/bin/docker ps -a --filter="ancestor=redis" --format='{{.Names}}'` | |
| /usr/bin/docker stop $DOCKER_NAME | |
| sudo rm /data/dump.rdb | |
| sudo cp hera_mc/data/test_data/dump.rdb /data | |
| /usr/bin/docker start $DOCKER_NAME | |
| DOCKER_IP=`docker inspect -f '{{range .NetworkSettings.Networks}}{{.IPAddress}}{{end}}' $DOCKER_NAME` | |
| echo "$DOCKER_IP redishost" | sudo tee -a /etc/hosts | |
| - name: Run Tests | |
| run: | | |
| python -m pytest --cov=hera_mc --cov-config=.coveragerc --cov-report xml:./coverage.xml --junitxml=test-reports/xunit.xml | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - uses: codecov/[email protected] | |
| if: matrix.os == 'ubuntu-latest' && success() | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} #required | |
| file: ./coverage.xml #optional | |
| min_deps: | |
| env: | |
| ENV_NAME: min_deps | |
| PYTHON: 3.9 | |
| WITH_SUDO: yes | |
| # use localhost for the host here because we are running the job on the VM. | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| name: min_deps testing | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| services: | |
| postgres: | |
| image: postgres:10.8 | |
| env: | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| # will assign a random free host port | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a healthcheck | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| fetch-depth: 1 | |
| - name: Setup Minimamba | |
| uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ env.PYTHON }} | |
| environment-file: ci/${{ env.ENV_NAME }}.yaml | |
| activate-environment: ${{ env.ENV_NAME }} | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != ${{ env.PYTHON }} ]]; then | |
| exit 1; | |
| fi | |
| - name: Install | |
| run: | | |
| pip install --no-deps . | |
| - name: Setup postgres | |
| run: | | |
| export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB | |
| psql $POSTGRES_URL -c 'create database hera_mc_test;' | |
| psql $POSTGRES_URL -c 'create database hera_mc;' | |
| psql $POSTGRES_URL -c "create user hera with password 'hera';" | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Upgrade Database Schema | |
| run: | | |
| mkdir ~/.hera_mc | |
| cp ci/example_config.json ~/.hera_mc/mc_config.json | |
| alembic upgrade head | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Run Tests | |
| run: | | |
| mkdir -p empty | |
| cd empty | |
| pytest --pyargs hera_mc --cov=hera_mc --cov-config=../.coveragerc --cov-report xml:../coverage.xml --junitxml=../test-reports/xunit.xml | |
| cd .. | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - uses: codecov/[email protected] | |
| if: success() | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} #required | |
| file: ./coverage.xml #optional | |
| min_versions: | |
| env: | |
| ENV_NAME: min_versions | |
| PYTHON: 3.8 | |
| WITH_SUDO: yes | |
| # use localhost for the host here because we are running the job on the VM. | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| name: min_versions testing | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| services: | |
| postgres: | |
| image: postgres:10.8 | |
| env: | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| # will assign a random free host port | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a healthcheck | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| fetch-depth: 1 | |
| - name: Setup Minimamba | |
| uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ env.PYTHON }} | |
| environment-file: ci/${{ env.ENV_NAME }}.yaml | |
| activate-environment: ${{ env.ENV_NAME }} | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != ${{ env.PYTHON }} ]]; then | |
| exit 1; | |
| fi | |
| - name: Install | |
| run: | | |
| pip install --no-deps . | |
| - name: Setup postgres | |
| run: | | |
| export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB | |
| psql $POSTGRES_URL -c 'create database hera_mc_test;' | |
| psql $POSTGRES_URL -c 'create database hera_mc;' | |
| psql $POSTGRES_URL -c "create user hera with password 'hera';" | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Upgrade Database Schema | |
| run: | | |
| mkdir ~/.hera_mc | |
| cp ci/example_config.json ~/.hera_mc/mc_config.json | |
| alembic upgrade head | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Run Tests | |
| run: | | |
| mkdir -p empty | |
| cd empty | |
| pytest --pyargs hera_mc --cov=hera_mc --cov-config=../.coveragerc --cov-report xml:../coverage.xml --junitxml=../test-reports/xunit.xml | |
| cd .. | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - uses: codecov/[email protected] | |
| if: success() | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} #required | |
| file: ./coverage.xml #optional | |
| warning_tests: | |
| env: | |
| ENV_NAME: tests | |
| PYTHON: 3.9 | |
| WITH_SUDO: yes | |
| # use localhost for the host here because we are running the job on the VM. | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| name: Warnings Test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| # Adding -l {0} helps ensure conda can be found properly. | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| services: | |
| postgres: | |
| image: postgres:10.8 | |
| env: | |
| POSTGRES_HOST: localhost | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| # will assign a random free host port | |
| - 5432:5432 | |
| # needed because the postgres container does not provide a healthcheck | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| redis: | |
| image: redis | |
| env: | |
| REDIS_HOST: redishost | |
| ports: | |
| - 6379:6379 | |
| options: --entrypoint redis-server --network-alias $REDIS_HOST -v /data:/data --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Minimamba | |
| uses: conda-incubator/[email protected] | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ env.PYTHON }} | |
| environment-file: ci/${{ env.ENV_NAME }}.yaml | |
| activate-environment: ${{ env.ENV_NAME }} | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != ${{ env.PYTHON }} ]]; then | |
| exit 1; | |
| fi | |
| - name: Install | |
| run: | | |
| pip install --no-deps . | |
| - name: Setup postgres | |
| run: | | |
| export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB | |
| psql $POSTGRES_URL -c 'create database hera_mc_test;' | |
| psql $POSTGRES_URL -c 'create database hera_mc;' | |
| psql $POSTGRES_URL -c "create user hera with password 'hera';" | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Upgrade Database Schema | |
| run: | | |
| mkdir ~/.hera_mc | |
| cp ci/example_config.json ~/.hera_mc/mc_config.json | |
| alembic upgrade head | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port | |
| - name: Initialize Redis | |
| # Grab the name of the redis container with bash magic | |
| # stop the container, replace the dump file with our save file | |
| # add the IP to the hosts file to preserve some hardcoded defaults | |
| run: | | |
| DOCKER_NAME=`/usr/bin/docker ps -a --filter="ancestor=redis" --format='{{.Names}}'` | |
| /usr/bin/docker stop $DOCKER_NAME | |
| sudo rm /data/dump.rdb | |
| sudo cp hera_mc/data/test_data/dump.rdb /data | |
| /usr/bin/docker start $DOCKER_NAME | |
| DOCKER_IP=`docker inspect -f '{{range .NetworkSettings.Networks}}{{.IPAddress}}{{end}}' $DOCKER_NAME` | |
| echo "$DOCKER_IP redishost" | sudo tee -a /etc/hosts | |
| - name: Run Tests | |
| run: | | |
| python -m pytest -W error | |
| env: | |
| POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port |