switch to building HDF5 with CMake #8
Workflow file for this run
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| name: "CodeQL Advanced" | ||
| on: | ||
| push: | ||
| branches: [ "develop" ] | ||
| pull_request: | ||
| branches: [ "develop" ] | ||
| schedule: | ||
| - cron: '16 17 * * 5' | ||
| jobs: | ||
| analyze: | ||
| name: Analyze (${{ matrix.language }}) | ||
| # Runner size impacts CodeQL analysis time. To learn more, please see: | ||
| # - https://gh.io/recommended-hardware-resources-for-running-codeql | ||
| # - https://gh.io/supported-runners-and-hardware-resources | ||
| # - https://gh.io/using-larger-runners (GitHub.com only) | ||
| # Consider using larger runners or machines with greater resources for possible analysis time improvements. | ||
| runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }} | ||
| permissions: | ||
| # required for all workflows | ||
| security-events: write | ||
| # required to fetch internal or private CodeQL packs | ||
| packages: read | ||
| # only required for workflows in private repositories | ||
| actions: read | ||
| contents: read | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| - language: c-cpp | ||
| build-mode: autobuild | ||
| # CodeQL supports the following values keywords for 'language': 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift' | ||
| # Use `c-cpp` to analyze code written in C, C++ or both | ||
| # Use 'java-kotlin' to analyze code written in Java, Kotlin or both | ||
| # Use 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both | ||
| # To learn more about changing the languages that are analyzed or customizing the build mode for your analysis, | ||
| # see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/customizing-your-advanced-setup-for-code-scanning. | ||
| # If you are analyzing a compiled language, you can modify the 'build-mode' for that language to customize how | ||
| # your codebase is analyzed, see https://docs.github.com/en/code-security/code-scanning/creating-an-advanced-setup-for-code-scanning/codeql-code-scanning-for-compiled-languages | ||
| steps: | ||
| - name: Checkout submodule Argobots | ||
| uses: actions/[email protected] | ||
| with: | ||
| submodules: 'true' | ||
| - name: Checkout HDF5 latest | ||
| uses: actions/[email protected] | ||
| with: | ||
| repository: HDFGroup/hdf5 | ||
| path: hdf5 | ||
| - name: Dependencies | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install libtool libopenmpi-dev zlib1g-dev python3 cmake | ||
| - name: Configure Async VOL (install dependencies) | ||
| run: | | ||
| mydir="$PWD" | ||
| export HDF5_DIR=$mydir/hdf5/install | ||
| export ABT_DIR=$mydir/argobots | ||
| export VOL_DIR=$mydir/vol-async/install | ||
| mkdir $HDF5_DIR | ||
| # Compile HDF5 | ||
| cd hdf5 | ||
| mkdir build | ||
| cd build | ||
| cmake -DCMAKE_INSTALL_PREFIX=$HDF5_DIR -DHDF5_ENABLE_PARALLEL=ON -DHDF5_ENABLE_THREADSAFE=ON \ | ||
| -DALLOW_UNSUPPORTED=ON -DBUILD_TESTING=OFF -DHDF5_BUILD_HL_LIB=OFF \ | ||
| -DHDF5_BUILD_EXAMPLES=OFF -DHDF5_BUILD_FORTRAN=OFF -DCMAKE_C_COMPILER=mpicc .. | ||
| make -j && make install | ||
| # Compile Argobots | ||
| cd $ABT_DIR | ||
| ./autogen.sh | ||
| ./configure --prefix=$ABT_DIR | ||
| make && make install | ||
| # Configure Asynchronous VOL connector | ||
| pwd | ||
| cd ../ | ||
| mkdir build | ||
| cd build | ||
| cmake -DCMAKE_INSTALL_PREFIX=$VOL_DIR -DCMAKE_C_COMPILER=mpicc .. | ||
| # Initializes the CodeQL tools for scanning. | ||
| - name: Initialize CodeQL | ||
| uses: github/codeql-action/init@v3 | ||
| with: | ||
| languages: ${{ matrix.language }} | ||
| build-mode: ${{ matrix.build-mode }} | ||
| config-file: ./.github/codeql-config.yml | ||
| # If you wish to specify custom queries, you can do so here or in a config file. | ||
| # By default, queries listed here will override any specified in a config file. | ||
| # Prefix the list here with "+" to use these queries and those in the config file. | ||
| # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs | ||
| queries: security-extended,security-and-quality | ||
| # If the analyze step fails for one of the languages you are analyzing with | ||
| # "We were unable to automatically build your code", modify the matrix above | ||
| # to set the build mode to "manual" for that language. Then modify this step | ||
| # to build your code. | ||
| # ℹ️ Command-line programs to run using the OS shell. | ||
| # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun | ||
| - if: matrix.build-mode == 'manual' | ||
| shell: bash | ||
| run: | | ||
| cd build | ||
| make && make install | ||
| ctest -V -E async_test_parallel5 . | ||
| - name: Perform CodeQL Analysis | ||
| uses: github/codeql-action/analyze@v3 | ||
| with: | ||
| category: "/language:${{matrix.language}}" | ||
