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Update branch with latest from develop #4708

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merged 22 commits into from
Aug 12, 2024
Merged

Update branch with latest from develop #4708

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f54abf7
Remove outdated line from Copyright header in new files. (#4676)
lrknox Jul 29, 2024
d309a40
Fix binary examples process (#4666)
byrnHDF Jul 30, 2024
9fd8856
Refactor threading and other concurrency support (#4469)
qkoziol Jul 31, 2024
26f052c
Warning fix (#4682)
brtnfld Aug 1, 2024
9dad0f9
Add file name argument to publish workflow (#4686)
byrnHDF Aug 1, 2024
0f620e9
CMake link line needs to use new HDF5_ENABLE_THREADS (#4685)
byrnHDF Aug 2, 2024
1be198d
Correct the properties for using THREADS library (#4690)
byrnHDF Aug 2, 2024
ef5dcd9
Bump the github-actions group with 5 updates (#4688)
dependabot[bot] Aug 2, 2024
f8e8256
doxygen file is a zipfile (#4687)
byrnHDF Aug 2, 2024
42095e3
Use filename in directory sync (#4691)
byrnHDF Aug 2, 2024
573c8bd
Fix segfault when closing datatype during failure in H5Topen2 (#4683)
jhendersonHDF Aug 2, 2024
ac11d66
unzip does not create extra dir (#4692)
byrnHDF Aug 2, 2024
6061296
Remove racey condition for starting threads (#4693)
qkoziol Aug 5, 2024
f77b708
Rework Dynamic Analysis and sanitize testing (#4681)
byrnHDF Aug 5, 2024
eede36f
Remove another H5E_BEGIN/END_TRY within the library (#4675)
qkoziol Aug 6, 2024
3967f2a
Drop H5E_BEGIN/END_TRY and just check the error return from H5I_clear…
qkoziol Aug 6, 2024
5c39fdd
Add check of returned value from API calls. (#4702)
bmribler Aug 8, 2024
3355a5e
Add mac dmg binary and remove old macos-13 workflows (#4699)
byrnHDF Aug 8, 2024
46a3a20
Add Windows SHLWAPI lib to public interface (#4701)
byrnHDF Aug 8, 2024
695c0f2
Use local variable in btree2 and print value (#4679)
byrnHDF Aug 9, 2024
48aaf0c
Add windows signing (#4703)
byrnHDF Aug 9, 2024
d875f74
Add tests for H5R get name APIs (#4657)
bmribler Aug 12, 2024
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3 changes: 3 additions & 0 deletions .clang-format
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Original file line number Diff line number Diff line change
Expand Up @@ -70,13 +70,16 @@ StatementMacros:
- FUNC_ENTER_API
- FUNC_ENTER_API_NAMECHECK_ONLY
- FUNC_ENTER_NOAPI
- FUNC_ENTER_NOAPI_NAMECHECK_ONLY
- FUNC_ENTER_NOAPI_NOERR
- FUNC_ENTER_NOAPI_NOINIT
- FUNC_ENTER_NOAPI_NOINIT_NOERR
- FUNC_ENTER_PACKAGE
- FUNC_LEAVE_API
- FUNC_LEAVE_API_NAMECHECK_ONLY
- FUNC_LEAVE_NOAPI
- FUNC_LEAVE_NOAPI_NAMECHECK_ONLY
- FUNC_LEAVE_NOAPI_VOID_NAMECHECK_ONLY
- FUNC_LEAVE_NOAPI_NOFS
- H5E_END_TRY
- H5E_PRINTF
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2 changes: 1 addition & 1 deletion .github/workflows/abi-report.yml
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Expand Up @@ -49,7 +49,7 @@ jobs:
- uses: actions/[email protected]

- name: Get published binary (Linux)
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e # v4.1.7
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
with:
name: tgz-ubuntu-2204_gcc-binary
path: ${{ github.workspace }}
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2 changes: 1 addition & 1 deletion .github/workflows/clang-format-check.yml
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Expand Up @@ -11,7 +11,7 @@
steps:
- uses: actions/[email protected]
- name: Run clang-format style check for C and Java code
uses: DoozyX/clang-format-lint-action@v0.13
uses: DoozyX/clang-format-lint-action@v0.17

Check warning

Code scanning / Scorecard

Pinned-Dependencies Medium

score is 1: third-party GitHubAction not pinned by hash
Remediation tip: update your workflow using https://app.stepsecurity.io
Click Remediation section below for further remediation help
with:
source: '.'
extensions: 'c,h,cpp,hpp,java'
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2 changes: 1 addition & 1 deletion .github/workflows/clang-format-fix.yml
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Expand Up @@ -23,7 +23,7 @@ jobs:
steps:
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
- name: Fix C and Java formatting issues detected by clang-format
uses: DoozyX/clang-format-lint-action@9ea72631b74e61ce337d0839a90e76180e997283 # v0.13
uses: DoozyX/clang-format-lint-action@d3c7f85989e3b6416265a0d12f8b4a8aa8b0c4ff # v0.13
with:
source: '.'
extensions: 'c,h,cpp,hpp,java'
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38 changes: 19 additions & 19 deletions .github/workflows/cmake-bintest.yml
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Expand Up @@ -33,7 +33,7 @@ jobs:

# Get files created by cmake-ctest script
- name: Get published binary (Windows)
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e # v4.1.7
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
with:
name: zip-vs2022_cl-${{ inputs.build_mode }}-binary
path: ${{ github.workspace }}/hdf5
Expand Down Expand Up @@ -107,7 +107,7 @@ jobs:
distribution: 'temurin'

- name: Get published binary (Linux)
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e # v4.1.7
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
with:
name: tgz-ubuntu-2204_gcc-${{ inputs.build_mode }}-binary
path: ${{ github.workspace }}
Expand Down Expand Up @@ -143,31 +143,31 @@ jobs:
cmake --workflow --preset=ci-StdShar-GNUC --fresh
shell: bash

test_binary_mac:
test_binary_mac_latest:
# MacOS w/ Clang + CMake
#
name: "MacOS Clang Binary Test"
runs-on: macos-latest
steps:
- name: Install Dependencies (MacOS)
- name: Install Dependencies (MacOS_latest)
run: brew install ninja doxygen

- name: Set up JDK 19
- name: Set up JDK 21
uses: actions/setup-java@v4
with:
java-version: '19'
java-version: '21'
distribution: 'temurin'

- name: Get published binary (MacOS)
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e # v4.1.7
- name: Get published binary (MacOS_latest)
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
with:
name: tgz-osx-${{ inputs.build_mode }}-binary
path: ${{ github.workspace }}
name: tgz-osx-${{ inputs.build_mode }}-binary
path: ${{ github.workspace }}

- name: Uncompress hdf5 binary (MacOS)
- name: Uncompress hdf5 binary (MacOS_latest)
run: |
cd "${{ github.workspace }}"
tar -zxvf ${{ github.workspace }}/HDF5-*-Darwin.tar.gz --strip-components 1
cd "${{ github.workspace }}"
tar -zxvf ${{ github.workspace }}/HDF5-*-Darwin.tar.gz --strip-components 1

- name: set hdf5lib name
id: set-hdf5lib-name
Expand All @@ -177,14 +177,14 @@ jobs:
echo "HDF5_ROOT=$HDF5DIR$FILE_NAME_HDF5" >> $GITHUB_OUTPUT
echo "HDF5_PLUGIN_PATH=$HDF5_ROOT/lib/plugin" >> $GITHUB_OUTPUT

- name: List files for the binaries (MacOS)
- name: List files for the binaries (MacOS_latest)
run: |
ls -l ${{ github.workspace }}/HDF_Group/HDF5
ls -l ${{ github.workspace }}/HDF_Group/HDF5

- name: List files for the space (MacOS)
- name: List files for the space (MacOS_latest)
run: |
ls ${{ github.workspace }}
ls ${{ runner.workspace }}
ls ${{ github.workspace }}
ls ${{ runner.workspace }}

# symlinks the compiler executables to a common location
- name: Setup GNU Fortran
Expand All @@ -194,7 +194,7 @@ jobs:
compiler: gcc
version: 12

- name: Run ctest (MacOS)
- name: Run ctest (MacOS_latest)
id: run-ctest
env:
HDF5_ROOT: ${{ steps.set-hdf5lib-name.outputs.HDF5_ROOT }}
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