Sync develop changes April 1 - April 3 to hdf5_1_14

.github/workflows/autotools.yml

@@ -2,7 +2,23 @@ name: hdf5 1.14 autools CI
 
 # Controls when the action will run. Triggers the workflow on push or pull request
 on:
-  workflow_call:
+  workflow_dispatch:
+  push:
+  pull_request:
+    branches: [ hdf5_1_14 ]
+    paths-ignore:
+      - '.github/CODEOWNERS'
+      - '.github/FUNDING.yml'
+      - 'doc/**'
+      - 'release_docs/**'
+      - 'ACKNOWLEDGEMENTS'
+      - 'COPYING**'
+      - '**.md'
+
+# Using concurrency to cancel any in-progress job or run
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref && github.ref || github.run_id }}
+  cancel-in-progress: true
 
 permissions:
   contents: read
@@ -83,10 +99,21 @@ jobs:
       with:
             build_mode: "production"
 
-    call-release-cmake-julia:
+    call-release-auto-julia:
         name: "Autotools Julia Workflows"
         uses: ./.github/workflows/julia-auto.yml
         with:
             build_mode: "production"
-
-
+
+    call-release-auto-xpr:
+        name: "Autotools TestExpress Workflows"
+        uses: ./.github/workflows/testxpr-auto.yml
+
+#  workflow-msys2-autotools:
+#    name: "CMake msys2 Workflows"
+#    uses: ./.github/workflows/msys2-auto.yml
+#    with:
+#        build_mode: "production"
+#        build_option: "--enable-production"
+
+

.github/workflows/cmake.yml

@@ -2,7 +2,23 @@ name: hdf5 1.14 cmake CI
 
 # Controls when the action will run. Triggers the workflow on push or pull request
 on:
-  workflow_call:
+  workflow_dispatch:
+  push:
+  pull_request:
+    branches: [ hdf5_1_14 ]
+    paths-ignore:
+      - '.github/CODEOWNERS'
+      - '.github/FUNDING.yml'
+      - 'doc/**'
+      - 'release_docs/**'
+      - 'ACKNOWLEDGEMENTS'
+      - 'COPYING**'
+      - '**.md'
+
+# Using concurrency to cancel any in-progress job or run
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref && github.ref || github.run_id }}
+  cancel-in-progress: true
 
 permissions:
   contents: read
@@ -91,4 +107,9 @@ jobs:
         uses: ./.github/workflows/julia-cmake.yml
         with:
             build_mode: "Release"
-
+
+    call-release-cmake-xpr:
+        name: "CMake TestExpress Workflows"
+        uses: ./.github/workflows/testxpr-cmake.yml
+
+

.github/workflows/release-files.yml

@@ -167,7 +167,7 @@ jobs:
           echo "${{ steps.get-file-base.outputs.FILE_BASE }}" > ./last-file.txt
 
       - name: Get NEWSLETTER
-        uses: actions/download-artifact@6b208ae046db98c579e8a3aa621ab581ff575935 # v4.1.1
+        uses: actions/download-artifact@c850b930e6ba138125429b7e5c93fc707a7f8427 # v4.1.4
         with:
               name: NEWSLETTER
               path: ${{ github.workspace }}
@@ -179,7 +179,7 @@ jobs:
       - name: PreRelease tag
         id: create_prerelease
         if: ${{ (inputs.use_environ == 'snapshots') }}
-        uses: softprops/action-gh-release@de2c0eb89ae2a093876385947365aca7b0e5f844 # v1
+        uses: softprops/action-gh-release@9d7c94cfd0a1f3ed45544c887983e9fa900f0564 # v2.0.4
         with:
           tag_name: "${{ inputs.use_tag }}"
           prerelease: true
@@ -204,7 +204,7 @@ jobs:
       - name: Release tag
         id: create_release
         if: ${{ (inputs.use_environ == 'release') }}
-        uses: softprops/action-gh-release@de2c0eb89ae2a093876385947365aca7b0e5f844 # v1
+        uses: softprops/action-gh-release@9d7c94cfd0a1f3ed45544c887983e9fa900f0564 # v2.0.4
         with:
           tag_name: "${{ inputs.use_tag }}"
           prerelease: false

.github/workflows/scorecard.yml

@@ -67,6 +67,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@8a470fddafa5cbb6266ee11b37ef4d8aae19c571 # v3.24.6
+        uses: github/codeql-action/upload-sarif@1b1aada464948af03b950897e5eb522f92603cc2 # v3.24.9
         with:
           sarif_file: results.sarif

.github/workflows/testxpr-auto.yml

@@ -0,0 +1,68 @@
+name: hdf5 TestExpress Autotools CI
+
+on:
+  workflow_call:
+
+permissions:
+  contents: read
+
+jobs:
+  build_and_test:
+    strategy:
+      matrix:
+        build_mode: ["production", "debug"]
+        include:
+          - build_mode: "production"
+          - build_mode: "debug"
+
+    name: "Autotools ${{ matrix.build_mode }} Express Test Workflows"
+
+    # Don't run the action if the commit message says to skip CI
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+
+    runs-on: ubuntu-latest
+    steps:
+      - name: Install Linux Dependencies
+        run: |
+           sudo apt-get update
+           sudo apt-get install ninja-build doxygen graphviz
+           sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
+           sudo apt install gcc-12 g++-12 gfortran-12
+           sudo apt install automake autoconf libtool libtool-bin
+           sudo apt install libaec0 libaec-dev
+           echo "CC=gcc-12" >> $GITHUB_ENV
+           echo "CXX=g++-12" >> $GITHUB_ENV
+           echo "FC=gfortran-12" >> $GITHUB_ENV
+
+      - name: Get Sources
+        uses: actions/[email protected]
+
+      - name: Autotools Configure
+        shell: bash
+        run: |
+           sh ./autogen.sh
+           mkdir "${{ runner.workspace }}/build"
+           cd "${{ runner.workspace }}/build"
+           $GITHUB_WORKSPACE/configure \
+                --enable-build-mode=${{ matrix.build_mode }} \
+                --enable-shared \
+                --disable-parallel \
+                --disable-cxx \
+                --disable-fortran \
+                --disable-java \
+                --with-szlib=yes
+
+      - name: Autotools Build
+        shell: bash
+        run:         |
+           make -j3
+        working-directory: ${{ runner.workspace }}/build
+
+      - name: Autotools Test
+        shell: bash
+        env:
+            HDF5TestExpress: 0
+        run: |
+           cd test
+           make -j3 check
+        working-directory: ${{ runner.workspace }}/build

.github/workflows/testxpr-cmake.yml

@@ -0,0 +1,66 @@
+name: hdf5 TestExpress CMake CI
+
+on:
+  workflow_call:
+
+permissions:
+  contents: read
+
+jobs:
+  build_and_test:
+    strategy:
+      matrix:
+        build_mode: ["Release", "Debug"]
+        include:
+          - build_mode: "Release"
+          - build_mode: "Debug"
+
+    name: "CMake ${{ matrix.build_mode }} Express Test Workflows"
+
+    # Don't run the action if the commit message says to skip CI
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+
+    runs-on: ubuntu-latest
+    steps:
+      - name: Install Linux Dependencies
+        run: |
+           sudo apt-get update
+           sudo apt-get install ninja-build doxygen graphviz
+           sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
+           sudo apt install libaec0 libaec-dev
+           sudo apt install gcc-12 g++-12 gfortran-12
+           echo "CC=gcc-12" >> $GITHUB_ENV
+           echo "CXX=g++-12" >> $GITHUB_ENV
+           echo "FC=gfortran-12" >> $GITHUB_ENV
+
+      - name: Get Sources
+        uses: actions/[email protected]
+
+      - name: CMake Configure
+        shell: bash
+        run: |
+           mkdir "${{ runner.workspace }}/build"
+           cd "${{ runner.workspace }}/build"
+           cmake -C $GITHUB_WORKSPACE/config/cmake/cacheinit.cmake \
+                -G Ninja \
+                -DCMAKE_BUILD_TYPE=${{ matrix.build_mode }} \
+                -DBUILD_SHARED_LIBS=ON \
+                -DHDF5_ENABLE_ALL_WARNINGS=ON \
+                -DHDF5_ENABLE_PARALLEL:BOOL=OFF \
+                -DHDF5_BUILD_CPP_LIB:BOOL=OFF \
+                -DHDF5_BUILD_FORTRAN=OFF \
+                -DHDF5_BUILD_JAVA=OFF \
+                -DHDF5_BUILD_DOC=OFF \
+                -DLIBAEC_USE_LOCALCONTENT=OFF \
+                -DZLIB_USE_LOCALCONTENT=OFF \
+                -DHDF_TEST_EXPRESS=0 \
+                $GITHUB_WORKSPACE
+
+      - name: CMake Build
+        run: cmake --build . --parallel 3 --config ${{ matrix.build_mode }}
+        working-directory: ${{ runner.workspace }}/build
+
+      - name: CMake Run Tests
+        run: ctest . --parallel 2 -C ${{ matrix.build_mode }} -V -R H5TESTXPR
+        working-directory: ${{ runner.workspace }}/build
+

CMakeLists.txt

@@ -679,6 +679,7 @@ if (HDF5_ENABLE_HDFS)
       list (APPEND LINK_LIBS -pthread)
     endif ()
   else ()
+    set (HDF5_ENABLE_HDFS OFF CACHE BOOL "Enable HDFS" FORCE)
     message (FATAL_ERROR "Set to use libhdfs library, but could not find or use libhdfs. Please verify that the path to HADOOP_HOME is valid, and/or reconfigure without HDF5_ENABLE_HDFS")
   endif ()
 endif ()
@@ -806,11 +807,15 @@ if (HDF5_ENABLE_SUBFILING_VFD)
 
   unset (CMAKE_EXTRA_INCLUDE_FILES)
   unset (CMAKE_REQUIRED_LIBRARIES)
+  if(NOT H5_HAVE_SUBFILING_VFD EQUAL 1)
+    set (HDF5_ENABLE_SUBFILING_VFD OFF CACHE BOOL "Build Parallel HDF5 Subfiling VFD" FORCE)
+  endif()
 endif()
 
 #option (DEFAULT_API_VERSION "Enable v1.14 API (v16, v18, v110, v112, v114)" "v114")
 set (DEFAULT_API_VERSION "v114" CACHE STRING "Enable v1.14 API (v16, v18, v110, v112, v114)")
 set_property (CACHE DEFAULT_API_VERSION PROPERTY STRINGS v16 v18 v110 v112 v114)
+
 #-----------------------------------------------------------------------------
 # Option to use 1.6.x API
 #-----------------------------------------------------------------------------
@@ -932,6 +937,8 @@ endif ()
 option (HDF5_ENABLE_MAP_API "Build the map API" OFF)
 if (HDF5_ENABLE_MAP_API)
   set (H5_HAVE_MAP_API 1)
+else ()
+  set (HDF5_ENABLE_MAP_API OFF CACHE BOOL "Build the map API" FORCE)
 endif ()
 
 #-----------------------------------------------------------------------------

HDF5Examples/C/H5PAR/CMakeLists.txt

@@ -32,7 +32,7 @@ if (H5EX_BUILD_TESTING)
     if (last_test)
       set_tests_properties (${EXAMPLE_VARNAME}_${testname}-clearall PROPERTIES DEPENDS ${last_test})
     endif ()
-    add_test (NAME ${EXAMPLE_VARNAME}_${testname} COMMAND "${CMAKE_COMMAND}"
+    add_test (NAME MPI_TEST_${EXAMPLE_VARNAME}_${testname} COMMAND "${CMAKE_COMMAND}"
         -D "TEST_PROGRAM=${MPIEXEC_EXECUTABLE};${MPIEXEC_NUMPROC_FLAG};${mumprocs};${MPIEXEC_PREFLAGS};$<TARGET_FILE:${EXAMPLE_VARNAME}_${testname}>;${MPIEXEC_POSTFLAGS}"
         -D "TEST_ARGS:STRING="
         -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
@@ -43,8 +43,8 @@ if (H5EX_BUILD_TESTING)
         -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_LIB_DIRECTORY}"
         -P "${H5EX_RESOURCES_DIR}/grepTest.cmake"
     )
-    set_tests_properties (${EXAMPLE_VARNAME}_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname}-clearall)
-    set (last_test "${EXAMPLE_VARNAME}_${testname}")
+    set_tests_properties (MPI_TEST_${EXAMPLE_VARNAME}_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_${testname}-clearall)
+    set (last_test "MPI_TEST_${EXAMPLE_VARNAME}_${testname}")
   endmacro ()
 
   # Ensure that 24 is a multiple of the number of processes.

HDF5Examples/FORTRAN/H5PAR/CMakeLists.txt

@@ -46,7 +46,7 @@ if (H5EX_BUILD_TESTING)
     if (last_test)
       set_tests_properties (${EXAMPLE_VARNAME}_f90_${testname}-clearall PROPERTIES DEPENDS ${last_test})
     endif ()
-    add_test (NAME ${EXAMPLE_VARNAME}_f90_${testname} COMMAND "${CMAKE_COMMAND}"
+    add_test (NAME MPI_TEST_${EXAMPLE_VARNAME}_f90_${testname} COMMAND "${CMAKE_COMMAND}"
         -D "TEST_PROGRAM=${MPIEXEC_EXECUTABLE};${MPIEXEC_NUMPROC_FLAG};${mumprocs};${MPIEXEC_PREFLAGS};$<TARGET_FILE:${EXAMPLE_VARNAME}_f90_${testname}>;${MPIEXEC_POSTFLAGS}"
         -D "TEST_ARGS:STRING="
         -D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
@@ -57,8 +57,8 @@ if (H5EX_BUILD_TESTING)
         -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_LIB_DIRECTORY}"
         -P "${H5EX_RESOURCES_DIR}/grepTest.cmake"
     )
-    set_tests_properties (${EXAMPLE_VARNAME}_f90_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_f90_${testname}-clearall)
-    set (last_test "${EXAMPLE_VARNAME}_f90_${testname}")
+    set_tests_properties (MPI_TEST_${EXAMPLE_VARNAME}_f90_${testname} PROPERTIES DEPENDS ${EXAMPLE_VARNAME}_f90_${testname}-clearall)
+    set (last_test "MPI_TEST_${EXAMPLE_VARNAME}_f90_${testname}")
   endmacro ()
 
   # Ensure that 24 is a multiple of the number of processes.

README.md

@@ -2,7 +2,8 @@ HDF5 version 1.14.4-1 currently under development
 
 ![HDF5 Logo](doxygen/img/HDF5.png)
 
-[![1.14 build status](https://img.shields.io/github/actions/workflow/status/HDFGroup/hdf5/main.yml?branch=hdf5_1_14&label=1.14)](https://github.com/HDFGroup/hdf5/actions/workflows/main.yml?query=branch%3Ahdf5_1_14)
+[![1.14 cmake build status](https://img.shields.io/github/actions/workflow/status/HDFGroup/hdf5/cmake.yml?branch=hdf5_1_14&label=HDF5%201.14%20CMake%20CI)](https://github.com/HDFGroup/hdf5/actions/workflows/cmake.yml?query=branch%3Ahdf5_1_14)
+[![1.14 autotools build status](https://img.shields.io/github/actions/workflow/status/HDFGroup/hdf5/autotools.yml?branch=hdf5_1_14&label=HDF5%201.14%20Autotools%20CI)](https://github.com/HDFGroup/hdf5/actions/workflows/autotools.yml?query=branch%3Ahdf5_1_14)
 [![BSD](https://img.shields.io/badge/License-BSD-blue.svg)](https://github.com/HDFGroup/hdf5/blob/hdf5_1_14/COPYING)
 
 *Please refer to the release_docs/INSTALL file for installation instructions.*