Synch workflows and require apt-get update

.github/workflows/cmake-bintest.yml

@@ -98,7 +98,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Install CMake Dependencies (Linux)
-        run: sudo apt-get install ninja-build doxygen graphviz
+        run: |
+          sudo apt-get update
+          sudo apt-get install ninja-build doxygen graphviz
 
       - name: Set up JDK 19
         uses: actions/setup-java@v4

.github/workflows/cmake-ctest.yml

@@ -122,7 +122,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Install CMake Dependencies (Linux)
-        run: sudo apt-get install ninja-build graphviz
+        run: |
+          sudo apt-get update
+          sudo apt-get install ninja-build graphviz
 
       - name: Install Dependencies
         uses: ssciwr/doxygen-install@v1
@@ -330,8 +332,9 @@ jobs:
     steps:
       - name: Install CMake Dependencies (Linux S3)
         run: |
-           sudo apt-get install ninja-build doxygen graphviz
-           sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
+          sudo apt-get update
+          sudo apt-get install ninja-build doxygen graphviz
+          sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
 
       - name: Set file base name (Linux S3)
         id: set-file-base
@@ -493,7 +496,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Install CMake Dependencies (Linux_intel)
-        run: sudo apt-get install ninja-build doxygen graphviz
+        run: |
+          sudo apt-get update
+          sudo apt-get install ninja-build doxygen graphviz
 
       - name: add oneAPI to env
         uses: fortran-lang/setup-fortran@v1

.github/workflows/intel-cmake.yml

@@ -22,7 +22,7 @@ jobs:
       - name: Install Dependencies (Linux)
         shell: bash
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
 

.github/workflows/julia-cmake.yml

@@ -22,7 +22,7 @@ jobs:
       - name: Install Dependencies
         shell: bash
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install ninja-build doxygen graphviz
           sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
           sudo apt install -y libaec-dev zlib1g-dev wget curl bzip2 flex bison cmake libzip-dev openssl build-essential

.github/workflows/main-auto-par-spc.yml

@@ -28,7 +28,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -86,7 +86,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/main-auto-par.yml

@@ -36,7 +36,7 @@ jobs:
       # SETUP
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/main-auto-spc.yml

@@ -28,7 +28,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -89,7 +89,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -150,7 +150,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -211,7 +211,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -272,7 +272,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -333,7 +333,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -394,7 +394,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -457,7 +457,7 @@ jobs:
       # libssl, etc. are needed for the ros3 VFD
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/main-auto.yml

@@ -37,7 +37,7 @@ jobs:
       # SETUP
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/main-cmake-par.yml

@@ -27,7 +27,7 @@ jobs:
 
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/main-cmake-spc.yml

@@ -26,7 +26,7 @@ jobs:
       # SETUP
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -86,7 +86,7 @@ jobs:
       # SETUP
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -146,7 +146,7 @@ jobs:
       # SETUP
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12
@@ -206,7 +206,7 @@ jobs:
       # SETUP
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/main-cmake.yml

@@ -124,7 +124,7 @@ jobs:
 
       - name: Install CMake Dependencies (Linux)
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/nvhpc-cmake.yml

@@ -22,7 +22,7 @@ jobs:
       - name: Install Dependencies
         shell: bash
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install ninja-build doxygen graphviz
           sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
           sudo apt install -y libaec-dev zlib1g-dev wget curl bzip2 flex bison cmake libzip-dev openssl build-essential

.github/workflows/testxpr.yml

@@ -45,7 +45,7 @@ jobs:
     steps:
       - name: Install Linux Dependencies
         run: |
-           sudo apt update
+           sudo apt-get update
            sudo apt-get install ninja-build doxygen graphviz
            sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
            sudo apt install gcc-12 g++-12 gfortran-12

.github/workflows/vfd-subfiling.yml

@@ -47,7 +47,7 @@ jobs:
     steps:
       - name: Install Linux Dependencies
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install automake autoconf libtool libtool-bin
         if: ${{ matrix.os == 'ubuntu-latest' }}
 
@@ -56,14 +56,14 @@ jobs:
       # versions of each, then build and cache those installations
       - name: Install OpenMPI
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install libopenmpi-dev
           echo "CC=mpicc" >> $GITHUB_ENV
         if: ${{ matrix.os == 'ubuntu-latest' && matrix.mpi_lib == 'OpenMPI' }}
 
       - name: Install MPICH
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install libmpich-dev
           echo "CC=mpicc" >> $GITHUB_ENV
         if: ${{ matrix.os == 'ubuntu-latest' && matrix.mpi_lib == 'MPICH' }}

.github/workflows/vol_adios2.yml

@@ -22,7 +22,7 @@ jobs:
     steps:
       - name: Install dependencies
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
 
       - name: Checkout HDF5

.github/workflows/vol_async.yml

@@ -18,7 +18,7 @@ jobs:
     steps:
       - name: Install dependencies
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
 
       - name: Checkout HDF5

.github/workflows/vol_cache.yml

@@ -31,7 +31,7 @@ jobs:
     steps:
       - name: Install dependencies
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
 
       - name: Checkout HDF5

.github/workflows/vol_ext_passthru.yml

@@ -18,7 +18,7 @@ jobs:
     steps:
       - name: Install dependencies
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev
 
       - name: Checkout HDF5

.github/workflows/vol_log.yml

@@ -18,7 +18,7 @@ jobs:
     steps:
       - name: Install dependencies
         run: |
-          sudo apt update
+          sudo apt-get update
           sudo apt-get install automake autoconf libtool libtool-bin libopenmpi-dev zlib1g-dev
           #mpich