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1 12 Merges from develop #421

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merged 41 commits into from
Mar 4, 2021
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6dc618c
OESS-98 fix tools test for plugins
byrnHDF Dec 15, 2020
1682bdf
sync fork
byrnHDF Jan 11, 2021
f856d77
Merge of changes from dev
byrnHDF Jan 15, 2021
317148f
Move problem option to bottom of the list until fixed
byrnHDF Jan 17, 2021
3cdb272
HDFFV-11106 - fix parsing optional args
byrnHDF Jan 19, 2021
2ccd184
HDFFV-11106 add note
byrnHDF Jan 19, 2021
0d0f7db
grammer fix
byrnHDF Jan 19, 2021
ffae47b
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Jan 20, 2021
0c86a42
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Jan 23, 2021
7839aa8
Whitespace after clang formatting
byrnHDF Jan 27, 2021
687da3b
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Jan 28, 2021
68407f1
Undo format version 11 changes
byrnHDF Jan 28, 2021
5ae710c
Update check to working version
byrnHDF Jan 28, 2021
9aa3dfb
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 1, 2021
95a2b2e
Merge workflow and minor changes from develop
byrnHDF Feb 1, 2021
bac4c43
Update supported platforms
byrnHDF Feb 2, 2021
f0620df
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 3, 2021
f2ce0fc
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 4, 2021
f87bd33
PR#3 merge from develop
byrnHDF Feb 4, 2021
9c925ad
Merge gcc 10 diagnostics option from develop
byrnHDF Feb 8, 2021
c14d750
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 8, 2021
ce8ce57
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 9, 2021
7e5fa9d
Merge #318 OSX changes from develop
byrnHDF Feb 9, 2021
098f01d
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 9, 2021
7c90450
Merge serval small changes from dev
byrnHDF Feb 16, 2021
c9734a2
fix typo
byrnHDF Feb 17, 2021
63cc7be
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 17, 2021
be2c50a
Minor non-space formatting changes
byrnHDF Feb 18, 2021
3bceb92
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 19, 2021
304fb27
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 20, 2021
321404e
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Feb 24, 2021
c2e100b
GH #386 copyright corrections for java folder
byrnHDF Feb 26, 2021
8691d6c
revert because logic requires false return
byrnHDF Mar 1, 2021
a4e9510
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Mar 1, 2021
373b5aa
Merges from develop
byrnHDF Mar 2, 2021
b90fd9d
Remove case statement for H5I_EVENTSET
byrnHDF Mar 2, 2021
afb1136
Correct call with versioning
byrnHDF Mar 2, 2021
6e44b70
Remove tabs
byrnHDF Mar 2, 2021
4db7f18
Double underscore change
byrnHDF Mar 2, 2021
f5e53b9
Merge branch 'hdf5_1_12' of https://github.com/HDFGroup/hdf5.git into…
byrnHDF Mar 3, 2021
910aa4e
Merges from develop
byrnHDF Mar 3, 2021
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6 changes: 3 additions & 3 deletions c++/src/H5AbstractDs.h
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef __AbstractDs_H
#define __AbstractDs_H
#ifndef AbstractDs_H
#define AbstractDs_H

namespace H5 {

Expand Down Expand Up @@ -81,4 +81,4 @@ class H5_DLLCPP AbstractDs {
}; // end of AbstractDs
} // namespace H5

#endif // __AbstractDs_H
#endif // AbstractDs_H
6 changes: 3 additions & 3 deletions c++/src/H5CommonFG.h
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef __CommonFG_H
#define __CommonFG_H
#ifndef CommonFG_H
#define CommonFG_H

namespace H5 {

Expand Down Expand Up @@ -83,7 +83,7 @@ class H5_DLLCPP CommonFG {
}; // end of CommonFG
} // namespace H5

#endif // __CommonFG_H
#endif // CommonFG_H

/***************************************************************************
Design Note
Expand Down
6 changes: 3 additions & 3 deletions c++/src/H5Group.h
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef __Group_H
#define __Group_H
#ifndef Group_H
#define Group_H

namespace H5 {

Expand Down Expand Up @@ -83,4 +83,4 @@ class H5_DLLCPP Group : public H5Object, public CommonFG {
}; // end of Group
} // namespace H5

#endif // __Group_H
#endif // Group_H
6 changes: 3 additions & 3 deletions c++/src/H5IdComponent.h
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef __IdComponent_H
#define __IdComponent_H
#ifndef IdComponent_H
#define IdComponent_H

namespace H5 {

Expand Down Expand Up @@ -113,4 +113,4 @@ class H5_DLLCPP IdComponent {
}; // end class IdComponent
} // namespace H5

#endif // __IdComponent_H
#endif // IdComponent_H
2 changes: 1 addition & 1 deletion config/gnu-cxxflags
Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@ if test "X-g++" = "X-$cxx_vendor"; then
# Enhanced Diagnostics #
########################

if test $cc_vers_major -ge 10; then
if test $cxx_vers_major -ge 10; then
NO_DIAGS_CXXFLAGS="-fdiagnostics-urls=never -fno-diagnostics-color"
fi
DIAGS_CXXFLAGS=
Expand Down
2 changes: 1 addition & 1 deletion config/gnu-fflags
Original file line number Diff line number Diff line change
Expand Up @@ -109,7 +109,7 @@ if test "X-gfortran" = "X-$f9x_vendor"; then
# Enhanced Diagnostics #
########################

if test $cc_vers_major -ge 10; then
if test $f9x_vers_major -ge 10; then
NO_DIAGS_FCFLAGS="-fdiagnostics-urls=never -fno-diagnostics-color"
fi
DIAGS_FCFLAGS=
Expand Down
4 changes: 2 additions & 2 deletions fortran/src/H5match_types.c
Original file line number Diff line number Diff line change
Expand Up @@ -70,8 +70,8 @@ initCfile(void)
* [email protected]. *\n\
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n\
\n\n\
#ifndef _H5f90i_gen_H\n\
#define _H5f90i_gen_H\n\
#ifndef H5f90i_gen_H\n\
#define H5f90i_gen_H\n\
\n\
/* This file is automatically generated by H5match_types.c at build time. */\n\
\n\
Expand Down
6 changes: 3 additions & 3 deletions java/src/jni/exceptionImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_exception */

#ifndef _Included_hdf_hdf5lib_H5_exception
#define _Included_hdf_hdf5lib_H5_exception
#ifndef Included_hdf_hdf5lib_H5_exception
#define Included_hdf_hdf5lib_H5_exception

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -67,4 +67,4 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMi
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_exception */
#endif /* Included_hdf_hdf5lib_H5_exception */
6 changes: 3 additions & 3 deletions java/src/jni/h5Imp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5 */

#ifndef _Included_hdf_hdf5lib_H5_H5
#define _Included_hdf_hdf5lib_H5_H5
#ifndef Included_hdf_hdf5lib_H5_H5
#define Included_hdf_hdf5lib_H5_H5

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -82,4 +82,4 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe(JNIEnv
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5 */
#endif /* Included_hdf_hdf5lib_H5_H5 */
6 changes: 3 additions & 3 deletions java/src/jni/h5aImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5A */

#ifndef _Included_hdf_hdf5lib_H5_H5A
#define _Included_hdf_hdf5lib_H5_H5A
#ifndef Included_hdf_hdf5lib_H5_H5A
#define Included_hdf_hdf5lib_H5_H5A

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -375,4 +375,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name(JNIEnv *, jclass
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5A */
#endif /* Included_hdf_hdf5lib_H5_H5A */
6 changes: 3 additions & 3 deletions java/src/jni/h5dImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5D */

#ifndef _Included_hdf_hdf5lib_H5_H5D
#define _Included_hdf_hdf5lib_H5_H5D
#ifndef Included_hdf_hdf5lib_H5_H5D
#define Included_hdf_hdf5lib_H5_H5D

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -322,4 +322,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Drefresh(JNIEnv *, jclass, jlong);
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5D */
#endif /* Included_hdf_hdf5lib_H5_H5D */
6 changes: 3 additions & 3 deletions java/src/jni/h5eImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5E */

#ifndef _Included_hdf_hdf5lib_H5_H5E
#define _Included_hdf_hdf5lib_H5_H5E
#ifndef Included_hdf_hdf5lib_H5_H5E
#define Included_hdf_hdf5lib_H5_H5E

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -144,4 +144,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ewalk2(JNIEnv *, jclass, jlong, jlo
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5E */
#endif /* Included_hdf_hdf5lib_H5_H5E */
6 changes: 3 additions & 3 deletions java/src/jni/h5fImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5F */

#ifndef _Included_hdf_hdf5lib_H5_H5F
#define _Included_hdf_hdf5lib_H5_H5F
#ifndef Included_hdf_hdf5lib_H5_H5F
#define Included_hdf_hdf5lib_H5_H5F

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -236,4 +236,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds(JNIEnv *, jcla
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5F */
#endif /* Included_hdf_hdf5lib_H5_H5F */
6 changes: 3 additions & 3 deletions java/src/jni/h5gImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5G */

#ifndef _Included_hdf_hdf5lib_H5_H5G
#define _Included_hdf_hdf5lib_H5_H5G
#ifndef Included_hdf_hdf5lib_H5_H5G
#define Included_hdf_hdf5lib_H5_H5G

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -96,4 +96,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Grefresh(JNIEnv *, jclass, jlong);
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5G */
#endif /* Included_hdf_hdf5lib_H5_H5G */
6 changes: 3 additions & 3 deletions java/src/jni/h5iImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5I */

#ifndef _Included_hdf_hdf5lib_H5_H5I
#define _Included_hdf_hdf5lib_H5_H5I
#ifndef Included_hdf_hdf5lib_H5_H5I
#define Included_hdf_hdf5lib_H5_H5I

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -130,4 +130,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Idestroy_1type(JNIEnv *, jclass, ji
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5I */
#endif /* Included_hdf_hdf5lib_H5_H5I */
6 changes: 3 additions & 3 deletions java/src/jni/h5jni.h
Original file line number Diff line number Diff line change
Expand Up @@ -21,8 +21,8 @@
#include <string.h>
#include "H5private.h"

#ifndef _Included_h5jni
#define _Included_h5jni
#ifndef Included_h5jni
#define Included_h5jni

#ifdef __cplusplus
#define ENVPTR (env)
Expand Down Expand Up @@ -344,4 +344,4 @@ extern jobject create_H5O_token_t(JNIEnv *env, const H5O_token_t *token, hbool_t
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_h5jni */
#endif /* Included_h5jni */
6 changes: 3 additions & 3 deletions java/src/jni/h5lImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5_H5L */

#ifndef _Included_hdf_hdf5lib_H5_H5L
#define _Included_hdf_hdf5lib_H5_H5L
#ifndef Included_hdf_hdf5lib_H5_H5L
#define Included_hdf_hdf5lib_H5_H5L

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -170,4 +170,4 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lunregister(JNIEnv *, jclass, jint)
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5L */
#endif /* Included_hdf_hdf5lib_H5_H5L */
6 changes: 3 additions & 3 deletions java/src/jni/h5oImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,8 @@
#include <jni.h>
/* Header for class hdf_hdf5lib_H5_H5_H5O */

#ifndef _Included_hdf_hdf5lib_H5_H5O
#define _Included_hdf_hdf5lib_H5_H5O
#ifndef Included_hdf_hdf5lib_H5_H5O
#define Included_hdf_hdf5lib_H5_H5O

#ifdef __cplusplus
extern "C" {
Expand Down Expand Up @@ -217,4 +217,4 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled(JN
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5O */
#endif /* Included_hdf_hdf5lib_H5_H5O */
6 changes: 3 additions & 3 deletions java/src/jni/h5pACPLImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef _Included_hdf_hdf5lib_H5_H5PACPL
#define _Included_hdf_hdf5lib_H5_H5PACPL
#ifndef Included_hdf_hdf5lib_H5_H5PACPL
#define Included_hdf_hdf5lib_H5_H5PACPL

#include <jni.h>

Expand All @@ -23,4 +23,4 @@ extern "C" {
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5PACPL */
#endif /* Included_hdf_hdf5lib_H5_H5PACPL */
6 changes: 3 additions & 3 deletions java/src/jni/h5pDAPLImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef _Included_hdf_hdf5lib_H5_H5PDAPL
#define _Included_hdf_hdf5lib_H5_H5PDAPL
#ifndef Included_hdf_hdf5lib_H5_H5PDAPL
#define Included_hdf_hdf5lib_H5_H5PDAPL

#include <jni.h>

Expand Down Expand Up @@ -93,4 +93,4 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap(JNIEnv
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5PDAPL */
#endif /* Included_hdf_hdf5lib_H5_H5PDAPL */
6 changes: 3 additions & 3 deletions java/src/jni/h5pDCPLImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef _Included_hdf_hdf5lib_H5_H5PDCPL
#define _Included_hdf_hdf5lib_H5_H5PDCPL
#ifndef Included_hdf_hdf5lib_H5_H5PDCPL
#define Included_hdf_hdf5lib_H5_H5PDCPL

#include <jni.h>

Expand Down Expand Up @@ -320,4 +320,4 @@ JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *,
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5PDCPL */
#endif /* Included_hdf_hdf5lib_H5_H5PDCPL */
6 changes: 3 additions & 3 deletions java/src/jni/h5pDXPLImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef _Included_hdf_hdf5lib_H5_H5PDXPL
#define _Included_hdf_hdf5lib_H5_H5PDXPL
#ifndef Included_hdf_hdf5lib_H5_H5PDXPL
#define Included_hdf_hdf5lib_H5_H5PDXPL

#include <jni.h>

Expand Down Expand Up @@ -181,4 +181,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios(JNIEnv *, jclas
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5PDXPL */
#endif /* Included_hdf_hdf5lib_H5_H5PDXPL */
6 changes: 3 additions & 3 deletions java/src/jni/h5pFAPLImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef _Included_hdf_hdf5lib_H5_H5PFAPL
#define _Included_hdf_hdf5lib_H5_H5PFAPL
#ifndef Included_hdf_hdf5lib_H5_H5PFAPL
#define Included_hdf_hdf5lib_H5_H5PFAPL

#include <jni.h>

Expand Down Expand Up @@ -476,4 +476,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds(JNIEnv *, jcla
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5PFAPL */
#endif /* Included_hdf_hdf5lib_H5_H5PFAPL */
6 changes: 3 additions & 3 deletions java/src/jni/h5pFCPLImp.h
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@
* [email protected]. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#ifndef _Included_hdf_hdf5lib_H5_H5PFCPL
#define _Included_hdf_hdf5lib_H5_H5PFCPL
#ifndef Included_hdf_hdf5lib_H5_H5PFCPL
#define Included_hdf_hdf5lib_H5_H5PFCPL

#include <jni.h>

Expand Down Expand Up @@ -170,4 +170,4 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(J
} /* end extern "C" */
#endif /* __cplusplus */

#endif /* _Included_hdf_hdf5lib_H5_H5PFCPL */
#endif /* Included_hdf_hdf5lib_H5_H5PFCPL */
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