not depend on doIO to free an MPI_Comm object #1642
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wkliao
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jhendersonHDF,
ChristopherHogan,
gnuoyd,
jrmainzer and
qkoziol
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qkoziol
approved these changes
Apr 15, 2022
derobins
approved these changes
Apr 15, 2022
derobins
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Apr 25, 2022
* Removes unused definitions from module headers (#1624) * Fix these Doxygen warnings #1581 (#1589) * Fixes a typo in H5.c (#1639) * free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638) * free MPI_Group/MPI_Comm/MPI_Datatype objects * fix clang-format style * Adds build and license shields to README.md (#1641) * First stab at a Github status bar * Adds a .tokeignore file for counting lines of code accurately * Yanks lines of code calculation since it wildly overcounts * not depend on doIO to free an MPI_Comm object (#1642) * free MPI datatypes previously created (#1637) * Retrieve MPI-IO hints used by MPI library after file open (#1636) H5Pget_fapl_mpio() should return an MPI info object containing all the MPI-IO hints used by the MPI library underneath, after the file is opened. Some hints, such as cb_nodes (number of I/O aggregators), are useful for HDF5 applications and I/O libraries built on top of HDF5. * OESS-168: Remove clang warnings. (#1309) * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox review. * OESS-168: Remove clang warnings. (#1376) * Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426) * Do not conditionally compile code that uses a pointer dereference and assignment to copy a potentially unaligned variable to aligned automatic storage, or vice versa. Instead, always use naked `memcpy(3)`s. Disassembling the generated code reveals that the `memcpy(3)`s optimize (`-O3`) to a single `mov` instruction for x86_64, which is not strict about alignment. This change reduces the size of code and scripts by 143 lines, eases our way to cross-compilation, and avoids invoking undefined behavior. * Committing clang-format changes * Per discussion, use HD and add comments. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t (#1651) * Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t * Committing clang-format changes * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Mirror vfd test fixes (#1629) * Use the FAPL that was created earlier in the test (and delete an unused variable). This allows 'make check-vfd' to pass with --enable-mirror-vfd. * Check for testing directory before creating, to avoid warning from bash. Clean out .libs directory before re-using it (after a failed test), to remove any files generated by libtool. * Committing clang-format changes * Increment error count on failed file open and skip tests for VFDs that need modified filenames. * Skip the mirror VFD for 'make check-vfd' - the mirror VFD requires networking configuration parameters and can't be provided for an automated test that is configured with an environment variable. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes HDF Group paths, adds shellcheck fixes (#1656) For more information: https://www.shellcheck.net/wiki/SC2086 -- Double quote to prevent globbing ... https://www.shellcheck.net/wiki/SC2230 -- which is non-standard. Use builti... https://www.shellcheck.net/wiki/SC2006 -- Use $(...) notation instead of le... * HDFFV-11306 Fixed (#1657) * HDFFV-11306, * Fixed it so both h5open_f and h5close_f can be called multiple times. * Fixed an issue with open objects remaining after h5close_f was called. * Added additional tests. * comments clean-up * Develop clang format java (#1653) * added HDFFV-11306 entry (#1662) * Adds the -q flag to all swmr test programs, quieting noisy output (#1665) * Adds paths-ignore to the Github pull request workflow (#1663) * Changes Github action `hdf5 dev CI` to `PR hdf5 dev CI` (#1666) So the PR action name is not the same as the one in main.yml * Replace H5detect's build-time detection of C99 integer properties with a (#1400) * Replace H5detect's build-time detection of C99 integer properties with a table-driven routine, `H5T__init_native_int()`, that is run at library initialization time. * Improve handling of copying of dynamic libraries and clean them up after (#1681) test finishes. Co-authored-by: Allen Byrne <[email protected]> Co-authored-by: Wei-keng Liao <[email protected]> Co-authored-by: H. Joe Lee <[email protected]> Co-authored-by: David Young <[email protected]> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Quincey Koziol <[email protected]> Co-authored-by: Scot Breitenfeld <[email protected]>
derobins
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Apr 26, 2022
* Removes unused definitions from module headers (#1624) * Fix these Doxygen warnings #1581 (#1589) * Fixes a typo in H5.c (#1639) * free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638) * free MPI_Group/MPI_Comm/MPI_Datatype objects * fix clang-format style * Adds build and license shields to README.md (#1641) * First stab at a Github status bar * Adds a .tokeignore file for counting lines of code accurately * Yanks lines of code calculation since it wildly overcounts * not depend on doIO to free an MPI_Comm object (#1642) * free MPI datatypes previously created (#1637) * Retrieve MPI-IO hints used by MPI library after file open (#1636) H5Pget_fapl_mpio() should return an MPI info object containing all the MPI-IO hints used by the MPI library underneath, after the file is opened. Some hints, such as cb_nodes (number of I/O aggregators), are useful for HDF5 applications and I/O libraries built on top of HDF5. * OESS-168: Remove clang warnings. (#1309) * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox review. * OESS-168: Remove clang warnings. (#1376) * Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426) * Do not conditionally compile code that uses a pointer dereference and assignment to copy a potentially unaligned variable to aligned automatic storage, or vice versa. Instead, always use naked `memcpy(3)`s. Disassembling the generated code reveals that the `memcpy(3)`s optimize (`-O3`) to a single `mov` instruction for x86_64, which is not strict about alignment. This change reduces the size of code and scripts by 143 lines, eases our way to cross-compilation, and avoids invoking undefined behavior. * Committing clang-format changes * Per discussion, use HD and add comments. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t (#1651) * Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t * Committing clang-format changes * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Mirror vfd test fixes (#1629) * Use the FAPL that was created earlier in the test (and delete an unused variable). This allows 'make check-vfd' to pass with --enable-mirror-vfd. * Check for testing directory before creating, to avoid warning from bash. Clean out .libs directory before re-using it (after a failed test), to remove any files generated by libtool. * Committing clang-format changes * Increment error count on failed file open and skip tests for VFDs that need modified filenames. * Skip the mirror VFD for 'make check-vfd' - the mirror VFD requires networking configuration parameters and can't be provided for an automated test that is configured with an environment variable. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes HDF Group paths, adds shellcheck fixes (#1656) For more information: https://www.shellcheck.net/wiki/SC2086 -- Double quote to prevent globbing ... https://www.shellcheck.net/wiki/SC2230 -- which is non-standard. Use builti... https://www.shellcheck.net/wiki/SC2006 -- Use $(...) notation instead of le... * HDFFV-11306 Fixed (#1657) * HDFFV-11306, * Fixed it so both h5open_f and h5close_f can be called multiple times. * Fixed an issue with open objects remaining after h5close_f was called. * Added additional tests. * comments clean-up * Develop clang format java (#1653) * added HDFFV-11306 entry (#1662) * Adds the -q flag to all swmr test programs, quieting noisy output (#1665) * Adds paths-ignore to the Github pull request workflow (#1663) * Changes Github action `hdf5 dev CI` to `PR hdf5 dev CI` (#1666) So the PR action name is not the same as the one in main.yml * Replace H5detect's build-time detection of C99 integer properties with a (#1400) * Replace H5detect's build-time detection of C99 integer properties with a table-driven routine, `H5T__init_native_int()`, that is run at library initialization time. * Improve handling of copying of dynamic libraries and clean them up after (#1681) test finishes. * Warnings fixes (#1680) * Clean stack size warnings in sio_engine (#1687) * Fixes stack size warnings in tcoords.c (#1688) * Minor things noticed while bringing VFD SWMR in line with develop (#1691) * Removed dead code, weird formatting, and other badness * Fixed remaining stack size warnings in onion VFD * Committing clang-format changes Co-authored-by: Allen Byrne <[email protected]> Co-authored-by: Wei-keng Liao <[email protected]> Co-authored-by: H. Joe Lee <[email protected]> Co-authored-by: David Young <[email protected]> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Quincey Koziol <[email protected]> Co-authored-by: Scot Breitenfeld <[email protected]> Co-authored-by: jhendersonHDF <[email protected]>
derobins
added a commit
that referenced
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May 3, 2022
… file (#1692) * Removes unused definitions from module headers (#1624) * Fix these Doxygen warnings #1581 (#1589) * Fixes a typo in H5.c (#1639) * free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638) * free MPI_Group/MPI_Comm/MPI_Datatype objects * fix clang-format style * Adds build and license shields to README.md (#1641) * First stab at a Github status bar * Adds a .tokeignore file for counting lines of code accurately * Yanks lines of code calculation since it wildly overcounts * not depend on doIO to free an MPI_Comm object (#1642) * free MPI datatypes previously created (#1637) * Retrieve MPI-IO hints used by MPI library after file open (#1636) H5Pget_fapl_mpio() should return an MPI info object containing all the MPI-IO hints used by the MPI library underneath, after the file is opened. Some hints, such as cb_nodes (number of I/O aggregators), are useful for HDF5 applications and I/O libraries built on top of HDF5. * OESS-168: Remove clang warnings. (#1309) * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox review. * OESS-168: Remove clang warnings. (#1376) * Adding a new API function to get the number of revisions for an onion file. This function uses H5FD_ctl(). * Committing clang-format changes * Removed a few unused variables. * Modified the way that the API function H5FDget_onion_revision_count is organized and added Doxygen comments for the three API functions. * Committing clang-format changes * Minor changes: modified some Doxygen comments. Co-authored-by: Dana Robinson <[email protected]> Co-authored-by: Allen Byrne <[email protected]> Co-authored-by: Wei-keng Liao <[email protected]> Co-authored-by: H. Joe Lee <[email protected]> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
derobins
added a commit
that referenced
this pull request
May 5, 2022
…he h5dump. (#1726) * Removes unused definitions from module headers (#1624) * Fix these Doxygen warnings #1581 (#1589) * Fixes a typo in H5.c (#1639) * free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638) * free MPI_Group/MPI_Comm/MPI_Datatype objects * fix clang-format style * Adds build and license shields to README.md (#1641) * First stab at a Github status bar * Adds a .tokeignore file for counting lines of code accurately * Yanks lines of code calculation since it wildly overcounts * not depend on doIO to free an MPI_Comm object (#1642) * free MPI datatypes previously created (#1637) * Retrieve MPI-IO hints used by MPI library after file open (#1636) H5Pget_fapl_mpio() should return an MPI info object containing all the MPI-IO hints used by the MPI library underneath, after the file is opened. Some hints, such as cb_nodes (number of I/O aggregators), are useful for HDF5 applications and I/O libraries built on top of HDF5. * OESS-168: Remove clang warnings. (#1309) * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox review. * OESS-168: Remove clang warnings. (#1376) * Added the support to get the revision count for the onion file into the h5dump. * Committing clang-format changes * Changed the function from H5FDget_onion_revision_count to H5FDonion_get_revision_count for better name. * Fixed compiler warnings. Co-authored-by: Dana Robinson <[email protected]> Co-authored-by: Allen Byrne <[email protected]> Co-authored-by: Wei-keng Liao <[email protected]> Co-authored-by: H. Joe Lee <[email protected]> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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doIO can be 0 and comm is created, but not freed.