Hdf5 1 12 merge fortran config and cmake changes (#737)

* OESS-98 fix tools test for plugins

* sync fork

* Merge of changes from dev

* Move problem option to bottom of the list until fixed

* HDFFV-11106 - fix parsing optional args

* HDFFV-11106 add note

* grammer fix

* Whitespace after clang formatting

* Undo format version 11 changes

* Update check to working version

* Merge workflow and minor changes from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge serval small changes from dev

* fix typo

* Minor non-space formatting changes

* GH #386 copyright corrections for java folder

* revert because logic requires false return

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Remove case statement for H5I_EVENTSET

* Correct call with versioning

* Remove tabs

* Double underscore change

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
Remove more underscores from header guards

* Merge #380 from develop

* Correct date entry

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* Some Javadoc warning fixes

* Committing clang-format changes

* Updated javadoc fixes

* HDFFV-11228/9 merges from develop

* remove obsolete debug comment

* Fix conflict

* HDFFV-11229 merge changes from develop

* HDFFV-11229 merge second compare from develop

* HDFFV-11229 fix reference file

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* Update with changes from develop

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Whitespace changes

* Rework CMake add_custom to use the BYPRODUCTS argument

* Revert CMake configure checks for round defines

* With VS 2015 minimum strdup is supported

* Doxygen comments merged from develop

* doxygen build updates

* Correct version string for map functions

* TRILAB-227 and tools debug merge from develop

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES in compiler id compare, merge from dev

* Revert test enable

* Add file to list

* doxygen version errors

* if blocks needed for build modes

* Update list of test platforms

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

* Merge CMake and java refs from dev

* Reworked CMake Fortran configure macros to allow multiple runs.

* Fix CMake issue with tests not comparing test argument properly.

* MAX_PRECISION defines must be defined with a value

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

config/cmake/H5pubconf.h.in

@@ -545,10 +545,10 @@
 #define H5_PACKAGE_VERSION "@HDF5_PACKAGE_VERSION_STRING@"
 
 /* Determine the maximum decimal precision in C */
-#cmakedefine H5_PAC_C_MAX_REAL_PRECISION @H5_PAC_C_MAX_REAL_PRECISION@
+#define H5_PAC_C_MAX_REAL_PRECISION @H5_PAC_C_MAX_REAL_PRECISION@
 
 /* Define Fortran Maximum Real Decimal Precision */
-#cmakedefine H5_PAC_FC_MAX_REAL_PRECISION @H5_PAC_FC_MAX_REAL_PRECISION@
+#define H5_PAC_FC_MAX_REAL_PRECISION @H5_PAC_FC_MAX_REAL_PRECISION@
 
 /* Width for printf() for type `long long' or `__int64', use `ll' */
 #cmakedefine H5_PRINTF_LL_WIDTH @H5_PRINTF_LL_WIDTH@

config/cmake/HDFCXXCompilerFlags.cmake

@@ -71,10 +71,6 @@ endif ()
 # HDF5 library compile options
 #-----------------------------------------------------------------------------
 
-#-----------------------------------------------------------------------------
-# CDash is configured to only allow 3000 warnings, so
-# break into groups (from the config/gnu-flags file)
-#-----------------------------------------------------------------------------
 if (NOT MSVC AND NOT MINGW)
   if (${CMAKE_SYSTEM_NAME} MATCHES "SunOS")
     list (APPEND HDF5_CMAKE_CXX_FLAGS "-erroff=%none -DBSD_COMP")
@@ -147,7 +143,7 @@ if (NOT MSVC AND NOT MINGW)
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/4.8-4.last")
     endif ()
 
-    # Append more extra warning flags that only gcc 4.8+ know about
+    # Append more extra warning flags that only gcc 4.8+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/4.8")
       if (HDF5_ENABLE_DEV_WARNINGS)
@@ -157,14 +153,14 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 4.9+ know about
+    # Append more extra warning flags that only gcc 4.9+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.9)
       # autotools always add the C flags with the CXX flags
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/4.9")
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/cxx-4.9")
     endif ()
 
-    # Append more extra warning flags that only gcc 5.1+ know about
+    # Append more extra warning flags that only gcc 5.1+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.0)
       # autotools always add the C flags with the CXX flags
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/cxx-5")
@@ -175,13 +171,13 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 6.x+ know about
+    # Append more extra warning flags that only gcc 6.x+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 6.0)
       # autotools always add the C flags with the CXX flags
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/6")
     endif ()
 
-    # Append more extra warning flags that only gcc 7.x+ know about
+    # Append more extra warning flags that only gcc 7.x+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 7.0)
       # autotools always add the C flags with the CXX flags
       ADD_H5_FLAGS (H5_CXxFLAGS2 "${HDF5_SOURCE_DIR}/config/gnu-warnings/7")
@@ -193,7 +189,7 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 8.x+ know about
+    # Append more extra warning flags that only gcc 8.x+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 8.0)
       # autotools always add the C flags with the CXX flags
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/8")
@@ -211,7 +207,7 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 9.x+ know about
+    # Append more extra warning flags that only gcc 9.x+ knows about
     if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 9.0)
       # autotools always add the C flags with the CXX flags
       ADD_H5_FLAGS (H5_CXXFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/9")

config/cmake/HDFCompilerFlags.cmake

@@ -81,10 +81,6 @@ endif ()
 # HDF5 library compile options
 #-----------------------------------------------------------------------------
 
-#-----------------------------------------------------------------------------
-# CDash is configured to only allow 3000 warnings, so
-# break into groups (from the config/gnu-flags file)
-#-----------------------------------------------------------------------------
 if (NOT MSVC AND NOT MINGW)
   #-----------------------------------------------------------------------------
   # Option to allow the user to interpret certain warnings as errors
@@ -178,7 +174,7 @@ if (NOT MSVC AND NOT MINGW)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/4.8-4.last")
     endif ()
 
-    # Append more extra warning flags that only gcc 4.8+ know about
+    # Append more extra warning flags that only gcc 4.8+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.8)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/4.8")
       if (HDF5_ENABLE_DEV_WARNINGS)
@@ -188,12 +184,12 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 4.9+ know about
+    # Append more extra warning flags that only gcc 4.9+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.9)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/4.9")
     endif ()
 
-    # Append more extra warning flags that only gcc 5.x+ know about
+    # Append more extra warning flags that only gcc 5.x+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.0)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/5")
       if (HDF5_ENABLE_WARNINGS_AS_ERRORS)
@@ -203,12 +199,12 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 6.x+ know about
+    # Append more extra warning flags that only gcc 6.x+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 6.0)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/6")
     endif ()
 
-    # Append more extra warning flags that only gcc 7.x+ know about
+    # Append more extra warning flags that only gcc 7.x+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 7.0)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/7")
       if (HDF5_ENABLE_DEV_WARNINGS)
@@ -218,7 +214,7 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 8.x+ know about
+    # Append more extra warning flags that only gcc 8.x+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 8.0)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/8")
       if (HDF5_ENABLE_WARNINGS_AS_ERRORS)
@@ -231,17 +227,17 @@ if (NOT MSVC AND NOT MINGW)
       endif ()
     endif ()
 
-    # Append more extra warning flags that only gcc 9.x+ know about
+    # Append more extra warning flags that only gcc 9.x+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 9.0)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/9")
     endif ()
 
-    # Append more extra warning flags that only gcc 9.3+ know about
+    # Append more extra warning flags that only gcc 9.3+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 9.3)
       ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/9.3")
     endif ()
 
-    # Append more extra warning flags that only gcc 10.x+ know about
+    # Append more extra warning flags that only gcc 10.x+ knows about
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 10.0)
       if (HDF5_ENABLE_DEV_WARNINGS)
         ADD_H5_FLAGS (H5_CFLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/developer-10")

config/cmake/HDFFortranCompilerFlags.cmake

@@ -80,37 +80,37 @@ if (NOT MSVC AND NOT MINGW)
 
   if (CMAKE_Fortran_COMPILER_ID STREQUAL "GNU")
 
-    # Append more extra warning flags that only gcc 4.8+ know about
+    # Append more extra warning flags that only gcc 4.8+ knows about
     if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 4.8)
       ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-4.8")
     endif ()
 
-    # Append more extra warning flags that only gcc 4.9+ know about
+    # Append more extra warning flags that only gcc 4.9+ knows about
     #if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 4.9)
     #  ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-4.9")
     #endif ()
 
-    # Append more extra warning flags that only gcc 5.x+ know about
+    # Append more extra warning flags that only gcc 5.x+ knows about
     if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 5.0)
       ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-5")
     endif ()
 
-    # Append more extra warning flags that only gcc 6.x+ know about
+    # Append more extra warning flags that only gcc 6.x+ knows about
     if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 6.0)
       ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-6")
     endif ()
 
-    # Append more extra warning flags that only gcc 7.x+ know about
+    # Append more extra warning flags that only gcc 7.x+ knows about
     #if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 7.0)
     #  ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-7")
     #endif ()
 
-    # Append more extra warning flags that only gcc 8.x+ know about
+    # Append more extra warning flags that only gcc 8.x+ knows about
     if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 8.0)
       ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-8")
     endif ()
 
-    # Append more extra warning flags that only gcc 9.x+ know about
+    # Append more extra warning flags that only gcc 9.x+ knows about
     #if (NOT CMAKE_Fortran_COMPILER_VERSION VERSION_LESS 9.0)
     #  ADD_H5_FLAGS (HDF5_CMAKE_Fortran_FLAGS "${HDF5_SOURCE_DIR}/config/gnu-warnings/gfort-9")
     #endif ()