Hdf5 1 12 1 - set version to 1.12.1 (#749)

* Hdf5 1 12 doxygen version correction (#658)

* OESS-98 fix tools test for plugins

* sync fork

* Merge of changes from dev

* Move problem option to bottom of the list until fixed

* HDFFV-11106 - fix parsing optional args

* HDFFV-11106 add note

* grammer fix

* Whitespace after clang formatting

* Undo format version 11 changes

* Update check to working version

* Merge workflow and minor changes from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge serval small changes from dev

* fix typo

* Minor non-space formatting changes

* GH #386 copyright corrections for java folder

* revert because logic requires false return

* Merges from develop

* Remove case statement for H5I_EVENTSET

* Correct call with versioning

* Remove tabs

* Double underscore change

* Merges from develop

Remove more underscores from header guards

* Merge #380 from develop

* Correct date entry

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* Some Javadoc warning fixes

* Committing clang-format changes

* Updated javadoc fixes

* HDFFV-11228/9 merges from develop

* remove obsolete debug comment

* Fix conflict

* HDFFV-11229 merge changes from develop

* HDFFV-11229 merge second compare from develop

* HDFFV-11229 fix reference file

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* Update with changes from develop

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Whitespace changes

* Rework CMake add_custom to use the BYPRODUCTS argument

* Revert CMake configure checks for round defines

* With VS 2015 minimum strdup is supported

* Doxygen comments merged from develop

* doxygen build updates

* Correct version string for map functions

* TRILAB-227 and tools debug merge from develop

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES in compiler id compare, merge from dev

* Revert test enable

* Add file to list

* doxygen version errors

* if blocks needed for build modes

* Update list of test platforms

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Attempt format uniformity in RELEASE.txt.

* BUG: DataSet assignment operator is missing (#503)

* BUG: DataSet assignment operator is missing

* Some compilers complain if the copy constructor is given explicitly
  but the assignment operator is implicitly set to default.

* Explicitly defining the assignment operator allows us to properly
  handle reference counters for shared resources.

* BUG: DataSet assignment operator is missing.

* Mimicking code of H5DataType::operator() as suggested by @bmribler.

* Added test

Description:
    Added test for DataSet::operator= that Leengit added
Platform tested:
    Linux/64 (jelly)

* Removed Author field.

* Commit clang format changes.

* Entry for Leengit's github PR #503

* Removed lines left by mistake

Co-authored-by: Binh-Minh Ribler <[email protected]>
Co-authored-by: Larry Knox <[email protected]>

* Add H5Dchunk_iter method for iterating over chunks (#6)

* Add H5Dchunk_iter method for iterating over chunks

This method iterates over all chunks in dataset, calling a user-supplied
callback with the chunk information and optional user supplied data.

The iterator is stopped when ITER_STOP is returned by the user-supplied
callback or the iterator is exhausted.

Existing methods to get chunk_info performs an iteration each time, so
to get many or all chunks causes SUM(i) for i = 0 -> N operations for N
chunks, as opposed to N operations when using this iterator for this use case.

* H5Dchunk_iter: test iterating all chunks, some chunks and failing iteration.

* H5D: move H5Dchunk_iter private methods to specific

* trace: add H5D_chunk_iter_op_t and trace H5D.c

* chunks-iter: document chunk_iter

* chunk-iter: chunk add FUNC_ENTER/FUNC_LEAVE macros

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Set initial doxygen version for H5Dchunk_iter().

* Revert "Set initial doxygen version for H5Dchunk_iter()."

This reverts commit d739e46.

* Revert "Add H5Dchunk_iter method for iterating over chunks (#6)"

This reverts commit 53e1139.

* Add flushrefresh errors with check-passthrough-vol to known problems in
RELEASE.txt.

* Minor RELEASE.txt updates.

* Hdf5 1 12 Remove version from pkgcfg file names (#672)

* OESS-98 fix tools test for plugins

* sync fork

* Merge of changes from dev

* Move problem option to bottom of the list until fixed

* HDFFV-11106 - fix parsing optional args

* HDFFV-11106 add note

* grammer fix

* Whitespace after clang formatting

* Undo format version 11 changes

* Update check to working version

* Merge workflow and minor changes from develop

* Update supported platforms

* PR#3 merge from develop

* Merge gcc 10 diagnostics option from develop

* Merge #318 OSX changes from develop

* Merge serval small changes from dev

* fix typo

* Minor non-space formatting changes

* GH #386 copyright corrections for java folder

* revert because logic requires false return

* Merges from develop

#358 patches from vtk
#361 fix header guard spelling

* Remove case statement for H5I_EVENTSET

* Correct call with versioning

* Remove tabs

* Double underscore change

* Merges from develop

#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
Remove more underscores from header guards

* Merge #380 from develop

* Correct date entry

* Split format source and commit changes on repo push

* remove pre-split setting

* Change windows TS to use older VS.

* HDFFV-11212 JNI export util and Javadoc

* Suggested review changes

* Another change found

* Committing clang-format changes

* Some Javadoc warning fixes

* Committing clang-format changes

* Updated javadoc fixes

* HDFFV-11228/9 merges from develop

* remove obsolete debug comment

* Fix conflict

* HDFFV-11229 merge changes from develop

* HDFFV-11229 merge second compare from develop

* HDFFV-11229 fix reference file

* HDFFV-11229 update autotools test script for two ref files

* HDFFV-11229 merge dev changes for long double display in tools

* Committing clang-format changes

* Update with changes from develop

* Add "option" command for clang options

* Rework CMake add_custom to use the BYPRODUCTS argument

Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.

* Whitespace changes

* Rework CMake add_custom to use the BYPRODUCTS argument

* Revert CMake configure checks for round defines

* With VS 2015 minimum strdup is supported

* Doxygen comments merged from develop

* doxygen build updates

* Correct version string for map functions

* TRILAB-227 and tools debug merge from develop

* TRILAB-227 Enable test

* Quote subset args

* Use MATCHES in compiler id compare, merge from dev

* Revert test enable

* Add file to list

* doxygen version errors

* if blocks needed for build modes

* Update list of test platforms

* Issue #669 remove version from pkgcfg filename

* remove version from h5cc script

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* More minor updates.

* Update configure disablhing memory alloc sanity check for release.
Last 50 lines of
/mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue_1021
Last 50 lines of
/mnt/scr1/SnapTest/snapshots-hdf5-branchtest4/log/moohan_0525Tue

* Set version to 1.12.1.

Co-authored-by: Allen Byrne <[email protected]>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Lee Newberg <[email protected]>
Co-authored-by: Binh-Minh Ribler <[email protected]>
Co-authored-by: Gaute Hope <[email protected]>

README.txt

@@ -1,4 +1,4 @@
-HDF5 version 1.12.1-6 currently under development
+HDF5 version 1.12.1 currently under development
 
 ------------------------------------------------------------------------------
 Please refer to the release_docs/INSTALL file for installation instructions.

c++/src/cpp_doc_config

@@ -38,7 +38,7 @@ PROJECT_NAME           =
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = "1.12.1-6, currently under development"
+PROJECT_NUMBER         = "1.12.1"
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

config/cmake/scripts/HDF5config.cmake

@@ -38,7 +38,7 @@ cmake_minimum_required (VERSION 3.12)
 ##############################################################################
 
 set (CTEST_SOURCE_VERSION "1.12.1")
-set (CTEST_SOURCE_VERSEXT "-6")
+set (CTEST_SOURCE_VERSEXT "")
 
 ##############################################################################
 # handle input parameters to script.

configure

@@ -1,7 +1,7 @@
 #! /bin/sh
 # From configure.ac Id: configure.ac 22697 2012-08-19 14:35:47Z hdftest .
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for HDF5 1.12.1-6.
+# Generated by GNU Autoconf 2.69 for HDF5 1.12.1.
 #
 # Report bugs to <[email protected]>.
 #
@@ -591,8 +591,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='HDF5'
 PACKAGE_TARNAME='hdf5'
-PACKAGE_VERSION='1.12.1-6'
-PACKAGE_STRING='HDF5 1.12.1-6'
+PACKAGE_VERSION='1.12.1'
+PACKAGE_STRING='HDF5 1.12.1'
 PACKAGE_BUGREPORT='[email protected]'
 PACKAGE_URL=''
 
@@ -1637,7 +1637,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures HDF5 1.12.1-6 to adapt to many kinds of systems.
+\`configure' configures HDF5 1.12.1 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1707,7 +1707,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of HDF5 1.12.1-6:";;
+     short | recursive ) echo "Configuration of HDF5 1.12.1:";;
    esac
   cat <<\_ACEOF
 
@@ -2018,7 +2018,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-HDF5 configure 1.12.1-6
+HDF5 configure 1.12.1
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -2933,7 +2933,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by HDF5 $as_me 1.12.1-6, which was
+It was created by HDF5 $as_me 1.12.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -3805,7 +3805,7 @@ fi
 
 # Define the identity of the package.
  PACKAGE='hdf5'
- VERSION='1.12.1-6'
+ VERSION='1.12.1'
 
 
 cat >>confdefs.h <<_ACEOF
@@ -34580,7 +34580,7 @@ Usage: $0 [OPTIONS]
 Report bugs to <[email protected]>."
 
 lt_cl_version="\
-HDF5 config.lt 1.12.1-6
+HDF5 config.lt 1.12.1
 configured by $0, generated by GNU Autoconf 2.69.
 
 Copyright (C) 2011 Free Software Foundation, Inc.
@@ -36656,7 +36656,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by HDF5 $as_me 1.12.1-6, which was
+This file was extended by HDF5 $as_me 1.12.1, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -36722,7 +36722,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-HDF5 config.status 1.12.1-6
+HDF5 config.status 1.12.1
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -24,7 +24,7 @@ AC_PREREQ([2.69])
 ## NOTE: Do not forget to change the version number here when we do a
 ## release!!!
 ##
-AC_INIT([HDF5], [1.12.1-6], [[email protected]])
+AC_INIT([HDF5], [1.12.1], [[email protected]])
 
 AC_CONFIG_SRCDIR([src/H5.c])
 AC_CONFIG_HEADERS([src/H5config.h])

release_docs/RELEASE.txt

@@ -1,4 +1,4 @@
-HDF5 version 1.12.1-6 currently under development
+HDF5 version 1.12.1 currently under development
 ================================================================================
 
 

src/H5public.h

@@ -107,11 +107,11 @@ extern "C" {
 /**
  * For pre-releases like \c snap0. Empty string for official releases.
  */
-#define H5_VERS_SUBRELEASE "6"
+#define H5_VERS_SUBRELEASE ""
 /**
  * Full version string
  */
-#define H5_VERS_INFO "HDF5 library version: 1.12.1-6"
+#define H5_VERS_INFO "HDF5 library version: 1.12.1"
 
 #define H5check() H5check_version(H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE)