Remove HD prefix from math functions #4654
Workflow file for this run
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| name: hdf5 dev CI | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| on: | |
| workflow_dispatch: | |
| push: | |
| pull_request: | |
| branches: [ develop ] | |
| paths-ignore: | |
| - '.github/CODEOWNERS' | |
| - '.github/FUNDING.yml' | |
| - 'doc/**' | |
| - 'release_docs/**' | |
| - 'ACKNOWLEDGEMENTS' | |
| - 'COPYING**' | |
| - '**.md' | |
| # Using concurrency to cancel any in-progress job or run | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.sha || github.event.pull_request.number }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| # A workflow run is made up of one or more jobs that can run sequentially or | |
| # in parallel. We just have one job, but the matrix items defined below will | |
| # run in parallel. | |
| jobs: | |
| # A workflow that builds the library and runs all the tests | |
| build_and_test: | |
| strategy: | |
| # The current matrix has three dimensions: | |
| # | |
| # * config name | |
| # * thread-safety on/off | |
| # * release vs. debug build | |
| # | |
| # Most configuration information is added via the 'include' mechanism, | |
| # which will append the key-value pairs in the configuration where the | |
| # names match. | |
| matrix: | |
| name: | |
| - "Windows MSVC CMake" | |
| - "Ubuntu gcc CMake" | |
| - "Ubuntu gcc Autotools" | |
| - "Ubuntu gcc Autotools parallel (build only)" | |
| - "MacOS Clang CMake" | |
| thread_safety: | |
| - enabled: true | |
| text: " TS" | |
| - enabled: false | |
| text: "" | |
| build_mode: | |
| - text: " REL" | |
| cmake: "Release" | |
| autotools: "production" | |
| - text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| # This is where we list the bulk of the options for each configuration. | |
| # The key-value pair values are usually appropriate for being CMake or | |
| # Autotools configure values, so be aware of that. | |
| include: | |
| # Windows w/ MSVC + CMake | |
| # | |
| # No Fortran, parallel, or VFDs that rely on POSIX things | |
| - name: "Windows MSVC CMake" | |
| os: windows-2022 | |
| toolchain: "" | |
| cpp: ON | |
| fortran: OFF | |
| java: ON | |
| docs: OFF | |
| libaecfc: ON | |
| localaec: OFF | |
| zlibfc: ON | |
| localzlib: OFF | |
| parallel: OFF | |
| mirror_vfd: OFF | |
| direct_vfd: OFF | |
| ros3_vfd: OFF | |
| generator: "-G \"Visual Studio 17 2022\" -A x64" | |
| run_tests: true | |
| # Linux (Ubuntu) w/ gcc + CMake | |
| # | |
| # We might think about adding Clang, but MacOS already tests that | |
| # so it's not critical | |
| - name: "Ubuntu gcc CMake" | |
| os: ubuntu-latest | |
| cpp: ON | |
| fortran: ON | |
| java: ON | |
| docs: ON | |
| libaecfc: ON | |
| localaec: OFF | |
| zlibfc: ON | |
| localzlib: OFF | |
| parallel: OFF | |
| mirror_vfd: ON | |
| direct_vfd: ON | |
| ros3_vfd: ON | |
| toolchain: "config/toolchain/gcc.cmake" | |
| generator: "-G Ninja" | |
| run_tests: true | |
| # Linux (Ubuntu) w/ gcc + Autotools | |
| # | |
| # Keep this identical to the CMake configs. Note the difference in | |
| # the values. | |
| - name: "Ubuntu gcc Autotools" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: enable | |
| default_api: v114 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: true | |
| # Parallel Linux (Ubuntu) w/ gcc + Autotools | |
| # | |
| # The GitHub runners are inadequate for running parallel HDF5 tests, | |
| # so we catch most issues in daily testing. What we have here is just | |
| # a compile check to make sure nothing obvious is broken. | |
| - name: "Ubuntu gcc Autotools parallel (build only)" | |
| os: ubuntu-latest | |
| cpp: disable | |
| fortran: enable | |
| java: disable | |
| docs: disable | |
| parallel: enable | |
| mirror_vfd: disable | |
| direct_vfd: disable | |
| ros3_vfd: disable | |
| deprec_sym: enable | |
| default_api: v114 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "CC=mpicc" | |
| run_tests: false | |
| # MacOS w/ Clang + CMake | |
| # | |
| # We could also build with the Autotools via brew installing them, | |
| # but that seems unnecessary | |
| - name: "MacOS Clang CMake" | |
| os: macos-13 | |
| cpp: ON | |
| fortran: OFF | |
| java: ON | |
| docs: OFF | |
| libaecfc: ON | |
| localaec: OFF | |
| zlibfc: ON | |
| localzlib: OFF | |
| parallel: OFF | |
| mirror_vfd: ON | |
| direct_vfd: OFF | |
| ros3_vfd: OFF | |
| toolchain: "config/toolchain/clang.cmake" | |
| generator: "-G Ninja" | |
| run_tests: true | |
| # | |
| # SPECIAL AUTOTOOLS BUILDS | |
| # | |
| # These do not run tests and are not built into the matrix and instead | |
| # become NEW configs as their name would clobber one of the matrix | |
| # names (so make sure the names are UNIQUE). | |
| # | |
| - name: "Ubuntu gcc Autotools v1.6 default API (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: enable | |
| default_api: v16 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| - name: "Ubuntu gcc Autotools v1.8 default API (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: enable | |
| default_api: v18 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| - name: "Ubuntu gcc Autotools v1.10 default API (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: enable | |
| default_api: v110 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| - name: "Ubuntu gcc Autotools v1.12 default API (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: enable | |
| default_api: v112 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| - name: "Ubuntu gcc Autotools v1.14 default API (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: enable | |
| default_api: v114 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| - name: "Ubuntu gcc Autotools no deprecated symbols (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: enable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: enable | |
| direct_vfd: enable | |
| ros3_vfd: enable | |
| deprec_sym: disable | |
| default_api: default | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| # Debug -Werror | |
| - name: "Ubuntu gcc Autotools -Werror (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: disable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: disable | |
| direct_vfd: enable | |
| ros3_vfd: disable | |
| deprec_sym: enable | |
| default_api: v114 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "CFLAGS=-Werror" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| # Production/Release -Werror | |
| - name: "Ubuntu gcc Autotools -Werror (build only)" | |
| os: ubuntu-latest | |
| cpp: enable | |
| fortran: disable | |
| java: enable | |
| docs: disable | |
| parallel: disable | |
| mirror_vfd: disable | |
| direct_vfd: enable | |
| ros3_vfd: disable | |
| deprec_sym: enable | |
| default_api: v114 | |
| szip: yes | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "CFLAGS=-Werror" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " REL" | |
| cmake: "Release" | |
| autotools: "production" | |
| # Parallel Debug -Werror | |
| - name: "Ubuntu gcc Autotools parallel -Werror (build only)" | |
| os: ubuntu-latest | |
| cpp: disable | |
| fortran: disable | |
| java: disable | |
| docs: disable | |
| parallel: enable | |
| mirror_vfd: disable | |
| direct_vfd: enable | |
| ros3_vfd: disable | |
| deprec_sym: enable | |
| default_api: v114 | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "CFLAGS=-Werror" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " DBG" | |
| cmake: "Debug" | |
| autotools: "debug" | |
| # Parallel production/release -Werror | |
| - name: "Ubuntu gcc Autotools parallel -Werror (build only)" | |
| os: ubuntu-latest | |
| cpp: disable | |
| fortran: disable | |
| java: disable | |
| docs: disable | |
| parallel: enable | |
| mirror_vfd: disable | |
| direct_vfd: enable | |
| ros3_vfd: disable | |
| deprec_sym: enable | |
| default_api: v114 | |
| toolchain: "" | |
| generator: "autogen" | |
| flags: "CFLAGS=-Werror" | |
| run_tests: false | |
| thread_safety: | |
| enabled: false | |
| text: "" | |
| build_mode: | |
| text: " REL" | |
| cmake: "Release" | |
| autotools: "production" | |
| # Sets the job's name from the properties | |
| name: "${{ matrix.name }}${{ matrix.build_mode.text }}${{ matrix.thread_safety.text }}" | |
| # Don't run the action if the commit message says to skip CI | |
| if: "!contains(github.event.head_commit.message, 'skip-ci')" | |
| # The type of runner that the job will run on | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # | |
| # SETUP | |
| # | |
| #Useful for debugging | |
| - name: Dump matrix context | |
| run: echo '${{ toJSON(matrix) }}' | |
| # Only CMake need ninja-build, but we just install it unilaterally | |
| # libssl, etc. are needed for the ros3 VFD | |
| - name: Install Linux Dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt-get install ninja-build doxygen graphviz | |
| sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev | |
| sudo apt install gcc-12 g++-12 gfortran-12 | |
| echo "CC=gcc-12" >> $GITHUB_ENV | |
| echo "CXX=g++-12" >> $GITHUB_ENV | |
| echo "FC=gfortran-12" >> $GITHUB_ENV | |
| if: matrix.os == 'ubuntu-latest' | |
| # CMake gets libaec from fetchcontent | |
| - name: Install Autotools Dependencies (Linux) | |
| run: | | |
| sudo apt install automake autoconf libtool libtool-bin | |
| sudo apt install libaec0 libaec-dev | |
| if: (matrix.generator == 'autogen') | |
| - name: Install Autotools Dependencies (Linux, parallel) | |
| run: | | |
| sudo apt install openmpi-bin openmpi-common mpi-default-dev | |
| echo "CC=mpicc" >> $GITHUB_ENV | |
| echo "FC=mpif90" >> $GITHUB_ENV | |
| if: (matrix.generator == 'autogen') && (matrix.parallel == 'enable') | |
| - name: Install Dependencies (Windows) | |
| run: choco install ninja | |
| if: matrix.os == 'windows-latest' | |
| - name: Install Dependencies (macOS) | |
| run: brew install ninja doxygen | |
| if: matrix.os == 'macos-13' | |
| - name: Set environment for MSVC (Windows) | |
| run: | | |
| # Set these environment variables so CMake picks the correct compiler | |
| echo "CXX=cl.exe" >> $GITHUB_ENV | |
| echo "CC=cl.exe" >> $GITHUB_ENV | |
| if: matrix.os == 'windows-latest' | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: Get Sources | |
| uses: actions/checkout@v3 | |
| # | |
| # AUTOTOOLS CONFIGURE | |
| # | |
| - name: Autotools Configure | |
| run: | | |
| sh ./autogen.sh | |
| mkdir "${{ runner.workspace }}/build" | |
| cd "${{ runner.workspace }}/build" | |
| ${{ matrix.flags }} $GITHUB_WORKSPACE/configure \ | |
| --enable-build-mode=${{ matrix.build_mode.autotools }} \ | |
| --${{ matrix.deprec_sym }}-deprecated-symbols \ | |
| --with-default-api-version=${{ matrix.default_api }} \ | |
| --enable-shared \ | |
| --${{ matrix.parallel }}-parallel \ | |
| --${{ matrix.cpp }}-cxx \ | |
| --${{ matrix.fortran }}-fortran \ | |
| --${{ matrix.java }}-java \ | |
| --${{ matrix.mirror_vfd }}-mirror-vfd \ | |
| --${{ matrix.direct_vfd }}-direct-vfd \ | |
| --${{ matrix.ros3_vfd }}-ros3-vfd \ | |
| --with-szlib=${{ matrix.szip }} | |
| shell: bash | |
| if: (matrix.generator == 'autogen') && ! (matrix.thread_safety.enabled) | |
| - name: Autotools Configure (Thread-Safe) | |
| run: | | |
| sh ./autogen.sh | |
| mkdir "${{ runner.workspace }}/build" | |
| cd "${{ runner.workspace }}/build" | |
| ${{ matrix.flags }} $GITHUB_WORKSPACE/configure \ | |
| --enable-build-mode=${{ matrix.build_mode.autotools }} \ | |
| --enable-shared \ | |
| --enable-threadsafe \ | |
| --disable-hl \ | |
| --${{ matrix.parallel }}-parallel \ | |
| --${{ matrix.mirror_vfd }}-mirror-vfd \ | |
| --${{ matrix.direct_vfd }}-direct-vfd \ | |
| --${{ matrix.ros3_vfd }}-ros3-vfd \ | |
| --with-szlib=${{ matrix.szip }} | |
| shell: bash | |
| if: (matrix.generator == 'autogen') && (matrix.thread_safety.enabled) | |
| # | |
| # CMAKE CONFIGURE | |
| # | |
| - name: CMake Configure | |
| run: | | |
| mkdir "${{ runner.workspace }}/build" | |
| cd "${{ runner.workspace }}/build" | |
| cmake -C $GITHUB_WORKSPACE/config/cmake/cacheinit.cmake \ | |
| ${{ matrix.generator }} \ | |
| -DCMAKE_BUILD_TYPE=${{ matrix.build_mode.cmake }} \ | |
| -DCMAKE_TOOLCHAIN_FILE=${{ matrix.toolchain }} \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DHDF5_ENABLE_ALL_WARNINGS=ON \ | |
| -DHDF5_ENABLE_PARALLEL:BOOL=${{ matrix.parallel }} \ | |
| -DHDF5_BUILD_CPP_LIB:BOOL=${{ matrix.cpp }} \ | |
| -DHDF5_BUILD_FORTRAN=${{ matrix.fortran }} \ | |
| -DHDF5_BUILD_JAVA=${{ matrix.java }} \ | |
| -DHDF5_BUILD_DOC=${{ matrix.docs }} \ | |
| -DBUILD_SZIP_WITH_FETCHCONTENT=${{ matrix.libaecfc }} \ | |
| -DLIBAEC_USE_LOCALCONTENT=${{ matrix.localaec }} \ | |
| -DBUILD_ZLIB_WITH_FETCHCONTENT=${{ matrix.zlibfc }} \ | |
| -DZLIB_USE_LOCALCONTENT=${{ matrix.localzlib }} \ | |
| -DHDF5_ENABLE_MIRROR_VFD:BOOL=${{ matrix.mirror_vfd }} \ | |
| -DHDF5_ENABLE_DIRECT_VFD:BOOL=${{ matrix.direct_vfd }} \ | |
| -DHDF5_ENABLE_ROS3_VFD:BOOL=${{ matrix.ros3_vfd }} \ | |
| $GITHUB_WORKSPACE | |
| shell: bash | |
| if: (matrix.generator != 'autogen') && ! (matrix.thread_safety.enabled) | |
| - name: CMake Configure (Thread-Safe) | |
| run: | | |
| mkdir "${{ runner.workspace }}/build" | |
| cd "${{ runner.workspace }}/build" | |
| cmake -C $GITHUB_WORKSPACE/config/cmake/cacheinit.cmake \ | |
| ${{ matrix.generator }} \ | |
| -DCMAKE_BUILD_TYPE=${{ matrix.build_mode.cmake }} \ | |
| -DCMAKE_TOOLCHAIN_FILE=${{ matrix.toolchain }} \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DHDF5_ENABLE_ALL_WARNINGS=ON \ | |
| -DHDF5_ENABLE_THREADSAFE:BOOL=ON \ | |
| -DHDF5_ENABLE_PARALLEL:BOOL=${{ matrix.parallel }} \ | |
| -DHDF5_BUILD_CPP_LIB:BOOL=OFF \ | |
| -DHDF5_BUILD_FORTRAN:BOOL=OFF \ | |
| -DHDF5_BUILD_JAVA:BOOL=OFF \ | |
| -DHDF5_BUILD_HL_LIB:BOOL=OFF \ | |
| -DHDF5_BUILD_DOC=OFF \ | |
| -DBUILD_SZIP_WITH_FETCHCONTENT=${{ matrix.libaecfc }} \ | |
| -DLIBAEC_USE_LOCALCONTENT=${{ matrix.localaec }} \ | |
| -DBUILD_ZLIB_WITH_FETCHCONTENT=${{ matrix.zlibfc }} \ | |
| -DZLIB_USE_LOCALCONTENT=${{ matrix.localzlib }} \ | |
| -DHDF5_ENABLE_MIRROR_VFD:BOOL=${{ matrix.mirror_vfd }} \ | |
| -DHDF5_ENABLE_DIRECT_VFD:BOOL=${{ matrix.direct_vfd }} \ | |
| -DHDF5_ENABLE_ROS3_VFD:BOOL=${{ matrix.ros3_vfd }} \ | |
| $GITHUB_WORKSPACE | |
| shell: bash | |
| if: (matrix.generator != 'autogen') && (matrix.thread_safety.enabled) | |
| # | |
| # BUILD | |
| # | |
| - name: Autotools Build | |
| run: make -j3 | |
| working-directory: ${{ runner.workspace }}/build | |
| if: matrix.generator == 'autogen' | |
| - name: CMake Build | |
| run: cmake --build . --parallel 3 --config ${{ matrix.build_mode.cmake }} | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator != 'autogen') | |
| # | |
| # RUN TESTS | |
| # | |
| # NORMAL | |
| - name: Autotools Run Tests | |
| run: make check -j2 | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator == 'autogen') && (matrix.run_tests) && ! (matrix.thread_safety.enabled) | |
| - name: CMake Run Tests | |
| run: ctest . --parallel 2 -C ${{ matrix.build_mode.cmake }} -V | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator != 'autogen') && (matrix.run_tests) && ! (matrix.thread_safety.enabled) | |
| # THREAD-SAFE | |
| - name: Autotools Run Thread-Safe Tests | |
| run: | | |
| cd test | |
| ./ttsafe | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator == 'autogen') && (matrix.run_tests) && (matrix.thread_safety.enabled) | |
| - name: CMake Run Thread-Safe Tests | |
| run: ctest . --parallel 2 -C ${{ matrix.build_mode.cmake }} -V -R ttsafe | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator != 'autogen') && (matrix.run_tests) && (matrix.thread_safety.enabled) | |
| # | |
| # INSTALL (note that this runs even when we don't run the tests) | |
| # | |
| - name: Autotools Install | |
| run: make install | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator == 'autogen') | |
| - name: Autotools Verify Install | |
| run: make check-install | |
| working-directory: ${{ runner.workspace }}/build | |
| if: (matrix.generator == 'autogen') |