updated R version of build_ci.yml workflow #386

Annotations

1 error and 10 warnings

Process completed with exit code 1.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-python@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

minimum score function gave negative number in --local mode for mate #1 of read '1:NM_014620:16:182; setting to 0 instead

skipping mate #1 of read '1:NM_014620:16:182' because length (0) <= # seed mismatches (0)

skipping mate #1 of read '1:NM_014620:16:182' because it was < 2 characters long

minimum score function gave negative number in --local mode for mate #1 of read '7:NM_022658:1912:184; setting to 0 instead

skipping mate #1 of read '7:NM_022658:1912:184' because length (0) <= # seed mismatches (0)

skipping mate #1 of read '7:NM_022658:1912:184' because it was < 2 characters long

minimum score function gave negative number in --local mode for mate #1 of read '9:NM_174914:46:212; setting to 0 instead

skipping mate #1 of read '9:NM_174914:46:212' because length (0) <= # seed mismatches (0)

skipping mate #1 of read '9:NM_174914:46:212' because it was < 2 characters long