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The Messenger: Fix various portal shuffle issues (ArchipelagoMW#2976)
* put constants in a bit more sensical order * fix accidental incorrect scoping * fix plando rules not being respected * add docstrings for the plando functions * fix the portal output pools being overwritten * use shuffle and pop instead of removing by content so plando can go to the same area twice * move portal pool rebuilding outside mapping creation * remove plando_connection cleansing since it isn't shared with transition shuffle
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