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Merge pull request #748 from MFraters/fix_JOSS_paper_references
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Fix JOSS paper references
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@MFraters
MFraters authored Aug 20, 2024
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32 changes: 16 additions & 16 deletions doc/JOSS/1.0/paper.bib
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@Article{Fraters_Thieulot_etal_2019,
AUTHOR = {Fraters, M. and Thieulot, C. and van den Berg, A. and Spakman, W.},
TITLE = {The Geodynamic World Builder: a solution for complex initial conditions in numerical modeling},
TITLE = {{The Geodynamic World Builder: a solution for complex initial conditions in numerical modeling}},
JOURNAL = {Solid Earth},
VOLUME = {10},
YEAR = {2019},
Expand All @@ -12,7 +12,7 @@ @Article{Fraters_Thieulot_etal_2019

@article{Bauville_Baumann_2019,
author = {Bauville, A. and Baumann, T. S.},
title = {geomIO: An Open-Source MATLAB Toolbox to Create the Initial Configuration of 2-D/3-D Thermo-Mechanical Simulations From 2-D Vector Drawings},
title = {{geomIO: An Open-Source MATLAB Toolbox to Create the Initial Configuration of 2-D/3-D Thermo-Mechanical Simulations From 2-D Vector Drawings}},
journal = {Geochemistry, Geophysics, Geosystems},
volume = {20},
number = {3},
Expand All @@ -27,7 +27,7 @@ @article{Bauville_Baumann_2019

@article{Spang_Baumann_2022,
author = {Spang, A. and Baumann, T. S. and Kaus, B. J. P.},
title = {Geodynamic Modeling With Uncertain Initial Geometries},
title = {{Geodynamic Modeling With Uncertain Initial Geometries}},
journal = {Geochemistry, Geophysics, Geosystems},
volume = {23},
number = {6},
Expand All @@ -50,24 +50,24 @@ @article{Beucher_Moresi_etal_2019
number = {36},
pages = {1136},
author = {Romain Beucher and Louis Moresi and Julian Giordani and John Mansour and Dan Sandiford and Rebecca Farrington and Luke Mondy and Claire Mallard and Patrice Rey and Guillaume Duclaux and Owen Kaluza and Arijit Laik and Sara Morón},
title = {UWGeodynamics: A teaching and research tool for numerical geodynamic modelling},
title = {{UWGeodynamics: A teaching and research tool for numerical geodynamic modelling}},
journal = {Journal of Open Source Software}
}
@article{Moresi_Dufour_2002,
authors = {Moresi, L. and Dufour, F. and Mühlhaus, HB. },
title = {Mantle Convection Modeling with Viscoelastic/Brittle Lithosphere: Numerical Methodology and Plate Tectonic Modeling.},
author = {Moresi, L. and Dufour, F. and Mühlhaus, HB.},
title = {{Mantle Convection Modeling with Viscoelastic/Brittle Lithosphere: Numerical Methodology and Plate Tectonic Modeling.}},
journal = {Pure appl. geophys.},
volume = {159},
pages = {2335–2356},
pages = {2335-2356},
year = {2002},
doi = {10.1007/s00024-002-8738-3},
url = {https://doi.org/10.1007/s00024-002-8738-3}
}

@article{Varga_Schaaf_2019,
AUTHOR = {de la Varga, M. and Schaaf, A. and Wellmann, F.},
TITLE = {GemPy 1.0: open-source stochastic geological modeling and inversion},
TITLE = {{GemPy 1.0: open-source stochastic geological modeling and inversion}},
JOURNAL = {Geoscientific Model Development},
VOLUME = {12},
YEAR = {2019},
Expand All @@ -79,7 +79,7 @@ @article{Varga_Schaaf_2019

@article{Schaaf_Varga_2021,
AUTHOR = {Schaaf, A. and de la Varga, M. and Wellmann, F. and Bond, C. E.},
TITLE = {Constraining stochastic 3-D structural geological models with topology information using approximate Bayesian computation in GemPy 2.1},
TITLE = {{Constraining stochastic 3-D structural geological models with topology information using approximate Bayesian computation in GemPy 2.1}},
JOURNAL = {Geoscientific Model Development},
VOLUME = {14},
YEAR = {2021},
Expand All @@ -90,7 +90,7 @@ @article{Schaaf_Varga_2021
}

@article{McKenzie_1970,
title = "Temperature and potential temperature beneath island arcs",
title = {{Temperature and potential temperature beneath island arcs}},
journal = "Tectonophysics",
volume = "10",
number = "1",
Expand Down Expand Up @@ -132,7 +132,7 @@ @software{sebastien_jourdain_2024
Aron Helser and
Paul Elliott and
ocrossi},
title = {Kitware/vtk-js: v29.7.2},
title = {{Kitware/vtk-js: v29.7.2}},
month = feb,
year = 2024,
publisher = {Zenodo},
Expand All @@ -142,7 +142,7 @@ @software{sebastien_jourdain_2024
}

@article{Billen_Fraters_AGU_2023,
title={A New Method for Assigning Thermal Structure to 2D and 3D Present-day Geodynamic and Seismological Models of Subduction Zones},
title={{A New Method for Assigning Thermal Structure to 2D and 3D Present-day Geodynamic and Seismological Models of Subduction Zones}},
author={Billen, Magali I and Fraters, Menno},
journal={AGU23},
year={2023},
Expand All @@ -151,7 +151,7 @@ @article{Billen_Fraters_AGU_2023
}

@article{vanderWiel_Hinsbergen_etal_2024,
title = {Linking rates of slab sinking to long-term lower mantle flow and mixing},
title = {{Linking rates of slab sinking to long-term lower mantle flow and mixing}},
journal = {Earth and Planetary Science Letters},
volume = {625},
pages = {118471},
Expand All @@ -165,7 +165,7 @@ @article{vanderWiel_Hinsbergen_etal_2024

@article{Sandiford_Craig_timothy_2023,
author = {Sandiford, Dan and Craig, Timothy J},
title = "{Plate bending earthquakes and the strength distribution of the lithosphere}",
title = {{Plate bending earthquakes and the strength distribution of the lithosphere}},
journal = {Geophysical Journal International},
volume = {235},
number = {1},
Expand All @@ -180,7 +180,7 @@ @article{Sandiford_Craig_timothy_2023

@ARTICLE{Gea_Negredo_etal_2023,
AUTHOR={Gea, Pedro J. and Negredo, Ana M. and Mancilla, Flor de Lis},
TITLE={The Gibraltar slab dynamics and its influence on past and present-day Alboran domain deformation: Insights from thermo-mechanical numerical modelling},
TITLE={{The Gibraltar slab dynamics and its influence on past and present-day Alboran domain deformation: Insights from thermo-mechanical numerical modelling}},
JOURNAL={Frontiers in Earth Science},
VOLUME={11},
YEAR={2023},
Expand All @@ -192,7 +192,7 @@ @ARTICLE{Gea_Negredo_etal_2023

@article{Saxena_Dannberg_etal_2023,
author = {Saxena, Arushi and Dannberg, Juliane and Gassmöller, Rene and Fraters, Menno and Heister, Timo and Styron, Richard},
title = {High-Resolution Mantle Flow Models Reveal Importance of Plate Boundary Geometry and Slab Pull Forces on Generating Tectonic Plate Motions},
title = {{High-Resolution Mantle Flow Models Reveal Importance of Plate Boundary Geometry and Slab Pull Forces on Generating Tectonic Plate Motions}},
journal = {Journal of Geophysical Research: Solid Earth},
volume = {128},
number = {8},
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2 changes: 1 addition & 1 deletion doc/JOSS/1.0/paper.md
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Expand Up @@ -77,7 +77,7 @@ These issues lead to a number of problems with the reproducibility and reliabili

![A workflow diagram for how a world builder file can be used to create and visualize a geodynamic model.](workflow_diagram.png)

The GWB has been used in several published studies to model global fault patterns, plume, and plate dynamics (@Saxena_Dannberg_etal_2023, @Gea_Negredo_etal_2023, @Sandiford_Craig_timothy_2023, and @vanderWiel_Hinsbergen_etal_2024). Other tools to solve this problem have emerged at around the same time as the first GWB release (@Fraters_Thieulot_etal_2019). Examples include GeomIO (@Bauville_Baumann_2019 and @Spang_Baumann_2022), which uses an approach based on vector graphics; Easy (https://easyinit.readthedocs.io/), which uses a more generic function-based approach; UWGeodynamics (@Beucher_Moresi_etal_2019), which is specifically designed for Underworld (@Moresi_Dufour_2002); and GemPy (@Varga_Schaaf_2019 and @Schaaf_Varga_2021), which is designed for structural modeling. The GWB was designed to be a more general planetary structure creator, using the methods shown below.
The GWB has been used in several published studies to model global fault patterns, plume, and plate dynamics [@Saxena_Dannberg_etal_2023; @Gea_Negredo_etal_2023; @Sandiford_Craig_timothy_2023; and @vanderWiel_Hinsbergen_etal_2024]. Other tools to solve this problem have emerged at around the same time as the first GWB release [@Fraters_Thieulot_etal_2019]. Examples include GeomIO [@Bauville_Baumann_2019; @Spang_Baumann_2022], which uses an approach based on vector graphics; Easy (https://easyinit.readthedocs.io/), which uses a more generic function-based approach; UWGeodynamics [@Beucher_Moresi_etal_2019], which is specifically designed for Underworld [@Moresi_Dufour_2002]; and GemPy [@Varga_Schaaf_2019; @Schaaf_Varga_2021], which is designed for structural modeling. The GWB was designed to be a more general planetary structure creator, using the methods shown below.

# Methods

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