test: minor bug-hunting resource rearrangement

GenomicMedLab · Jan 25, 2024 · 092f3c0 · 092f3c0
1 parent 6c703ab
commit 092f3c0
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Showing 2 changed files with 535 additions and 4 deletions.
diff --git a/misc/bug_hunting/check_align.py b/misc/bug_hunting/check_align.py
@@ -4,7 +4,7 @@
 from cool_seq_tool.schemas import Strand
 
 from dcd_mapping.align import align
-from dcd_mapping.resources import LOCAL_STORE_PATH, get_scoreset_metadata
+from dcd_mapping.resources import get_scoreset_metadata
 
 logging.basicConfig(
     filename="dcd-check-align.log",
@@ -18,13 +18,13 @@
 with open("notebooks/analysis/results/mave_blat.pickle", "rb") as f:
     mave_blat_dict = pickle.load(f)
 
-with open(LOCAL_STORE_PATH / "human_urns.txt", "r") as f:
+with open("human_urns.txt", "r") as f:
     urns = [line.strip() for line in f.readlines()]
 
 strand_reformat = {1: Strand.POSITIVE, -1: Strand.NEGATIVE}
 
 
-def format_chrom(chrom):
+def chrom_reformat(chrom):
     return f"chr{chrom}"
 
 
@@ -41,7 +41,7 @@ def format_chrom(chrom):
     original = mave_blat_dict[urn]
     try:
         for name, actual, expected in [
-            ("chromosome", alignment.chrom, format_chrom(original["chrom"])),
+            ("chromosome", alignment.chrom, chrom_reformat(original["chrom"])),
             ("strand", alignment.strand, strand_reformat[original["strand"]]),
         ]:
             if actual != expected: