Allow GMTDataArrayAccessor to work on sliced datacubes #1581
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If `grdinfo` can't read the source NetCDF file as it is an n-dimensional datacube (instead of a 2D grid), we fallback to setting the default gridline registration and Cartesian grid type.
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So that the file can be deleted on Windows.
| @@ -34,7 +34,7 @@ def __init__(self, xarray_obj): | |||
| self._registration, self._gtype = map( | |||
| int, grdinfo(self._source, per_column="n", o="10,11").split() | |||
| ) | |||
| except KeyError: | |||
| except (KeyError, ValueError): | |||
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As I understand it, previous imports of sliced datacubes would result in a ValueError, so this makes an exception for it and sets the grid registration and type to a default?
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Correct. Sliced datacubes will fallback to using the default grid registration and type instead of raising a ValueError.
willschlitzer
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seisman
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| fname = which( | ||
| "https://github.com/pydata/xarray-data/raw/master/eraint_uvz.nc", | ||
| download="u", | ||
| ) |
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Do we want to cache this file in CI?
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Probably don't need to, since this file is on GitHub, and our CI is on GitHub too, so if GitHub is down, nothing will work 😆
michaelgrund
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…gTools#1581) If `grdinfo` can't read the source NetCDF file as it is an n-dimensional datacube (instead of a 2D grid), we fallback to setting the default gridline registration and Cartesian grid type. * Use with statement to ensure the grid is properly closed So that the file can be deleted on Windows. Co-authored-by: Will Schlitzer <[email protected]>
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Description of proposed changes
If
grdinfocan't read the source NetCDF file as it is an n-dimensional datacube (instead of a 2D grid), we fallback to setting the default gridline registration and Cartesian grid type.Note that a warning like
grdinfo [WARNING]: Detected a data cube (eraint_uvz.nc) but -Q not set - skippingwill still be emitted, but runninggrid.gmt.registrationshould still work. Perhaps a better way would be to try to usegrdinfo -Q, but then we would somehow need to know which variable within the datacube people have sliced.Fixes #1578, Addresses #524 (comment)
Reminders
make formatandmake checkto make sure the code follows the style guide.doc/api/index.rst.Slash Commands
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/command) in the first line of a comment to performspecific operations. Supported slash commands are:
/format: automatically format and lint the code/test-gmt-dev: run full tests on the latest GMT development version