pygmt.triangulate.delaunay_triples: Improve performance by storing output in virtual files #1324
Workflow file for this run
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| # Run performance benchmarks | |
| # | |
| # Continuous benchmarking using pytest-codspeed. Measures the execution speed | |
| # of tests marked with @pytest.mark.benchmark decorator. | |
| name: Benchmarks | |
| on: | |
| # Run on pushes to the main branch | |
| push: | |
| branches: [ main ] | |
| paths: | |
| - 'pygmt/**/*.py' | |
| - '.github/workflows/benchmarks.yml' | |
| # Run in PRs but only if the PR has the 'run/benchmark' label | |
| pull_request: | |
| types: [ opened, reopened, labeled, synchronize ] | |
| # `workflow_dispatch` allows CodSpeed to trigger backtest | |
| # performance analysis in order to generate initial data. | |
| workflow_dispatch: | |
| release: | |
| types: | |
| - published | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
| jobs: | |
| benchmarks: | |
| runs-on: ubuntu-22.04 | |
| if: github.repository == 'GenericMappingTools/pygmt' && (github.event_name != 'pull_request' || contains(github.event.pull_request.labels.*.name, 'run/benchmark')) | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| # Checkout current git repository | |
| - name: Checkout | |
| uses: actions/[email protected] | |
| with: | |
| # fetch all history so that setuptools-scm works | |
| fetch-depth: 0 | |
| # Install Miniconda with conda-forge dependencies | |
| - name: Setup Miniconda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| auto-activate-base: true | |
| activate-environment: "" # base environment | |
| channels: conda-forge,nodefaults | |
| channel-priority: strict | |
| # Install GMT and dependencies from conda-forge | |
| - name: Install dependencies | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| # Preprend $CONDA/bin to $PATH so that conda's python is used over system python | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| conda install --solver=libmamba gmt=6.5.0 python=3.12 \ | |
| numpy pandas xarray netCDF4 packaging \ | |
| geopandas pyarrow pytest pytest-mpl | |
| python -m pip install -U pytest-codspeed setuptools | |
| # Download cached remote files (artifacts) from GitHub | |
| - name: Download remote data from GitHub | |
| uses: dawidd6/[email protected] | |
| with: | |
| workflow: cache_data.yaml | |
| workflow_conclusion: success | |
| name: gmt-cache | |
| path: .gmt | |
| # Move downloaded files to ~/.gmt directory and list them | |
| - name: Move and list downloaded remote files | |
| run: | | |
| mkdir -p ~/.gmt | |
| mv .gmt/* ~/.gmt | |
| # Change modification times of the two files, so GMT won't refresh it | |
| touch ~/.gmt/gmt_data_server.txt ~/.gmt/gmt_hash_server.txt | |
| ls -lhR ~/.gmt | |
| # Install the package that we want to test | |
| - name: Install the package | |
| run: make install | |
| # Run the benchmark tests | |
| - name: Run benchmarks | |
| uses: CodSpeedHQ/[email protected] | |
| with: | |
| run: | | |
| python -c "import pygmt; pygmt.show_versions()" | |
| PYGMT_USE_EXTERNAL_DISPLAY="false" python -m pytest -r P --pyargs pygmt --codspeed | |
| env: | |
| GMT_LIBRARY_PATH: /usr/share/miniconda/lib/ |