fix: allow stop codon symbol for AminoAcidMutations

GenSpectrum · Dec 18, 2023 · 74cfa74 · 74cfa74
1 parent 4a75342
commit 74cfa74
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Showing 2 changed files with 5 additions and 1 deletion.
diff --git a/lapis2/src/main/kotlin/org/genspectrum/lapis/request/AminoAcidMutation.kt b/lapis2/src/main/kotlin/org/genspectrum/lapis/request/AminoAcidMutation.kt
@@ -34,7 +34,7 @@ data class AminoAcidMutation(val gene: String, val position: Int, val symbol: St
 
 private val AMINO_ACID_MUTATION_REGEX =
     Regex(
-        """^((?<gene>[a-zA-Z0-9_-]+):)(?<symbolFrom>[a-zA-Z]?)(?<position>\d+)(?<symbolTo>[a-zA-Z.-])?$""",
+        """^((?<gene>[a-zA-Z0-9_-]+):)(?<symbolFrom>[a-zA-Z]?)(?<position>\d+)(?<symbolTo>[a-zA-Z*.-])?$""",
     )
 
 @JsonComponent

diff --git a/lapis2/src/test/kotlin/org/genspectrum/lapis/request/AminoAcidMutationTest.kt b/lapis2/src/test/kotlin/org/genspectrum/lapis/request/AminoAcidMutationTest.kt
@@ -72,6 +72,10 @@ class AminoAcidMutationTest {
                     "\"gene:123a\"",
                     AminoAcidMutation("gene", 123, "A"),
                 ),
+                Arguments.of(
+                    "\"ORF1b:123*\"",
+                    AminoAcidMutation("ORF1b", 123, "*"),
+                ),
             )
 
         @JvmStatic