fix: make stop codon a valid symbolFrom for amino acid mutations

GenSpectrum · Feb 8, 2024 · 43e5e9e · 43e5e9e
1 parent c540153
commit 43e5e9e
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 1 deletion.
diff --git a/lapis2/src/main/kotlin/org/genspectrum/lapis/request/AminoAcidMutation.kt b/lapis2/src/main/kotlin/org/genspectrum/lapis/request/AminoAcidMutation.kt
@@ -53,7 +53,7 @@ data class AminoAcidMutation(
 
 private val AMINO_ACID_MUTATION_REGEX =
     Regex(
-        """^((?<gene>[a-zA-Z0-9_-]+):)(?<symbolFrom>[a-zA-Z]?)(?<position>\d+)(?<symbolTo>[a-zA-Z*.-])?$""",
+        """^((?<gene>[a-zA-Z0-9_-]+):)(?<symbolFrom>[a-zA-Z*]?)(?<position>\d+)(?<symbolTo>[a-zA-Z*.-])?$""",
     )
 
 @JsonComponent

diff --git a/lapis2/src/test/kotlin/org/genspectrum/lapis/request/AminoAcidMutationTest.kt b/lapis2/src/test/kotlin/org/genspectrum/lapis/request/AminoAcidMutationTest.kt
@@ -88,6 +88,10 @@ class AminoAcidMutationTest {
                     "\"MAYBE(gene1:G123A)\"",
                     AminoAcidMutation("gene1", 123, "A", maybe = true),
                 ),
+                Arguments.of(
+                    "\"gene1:*123A\"",
+                    AminoAcidMutation("gene1", 123, "A", maybe = false),
+                ),
             )
 
         @JvmStatic