feat: Better test coverage for SymbolEquals filter

endToEndTests/test/info.test.js

@@ -9,7 +9,7 @@ describe('The /info endpoint', () => {
       .expect(200)
       .expect('Content-Type', 'application/json')
       .expect(headerToHaveDataVersion)
-      .expect({ nBitmapsSize: 3898, sequenceCount: 100, totalSize: 26589432 });
+      .expect({ nBitmapsSize: 3898, sequenceCount: 100, totalSize: 26589464 });
   });
 
   it('should return detailed info about the current state of the database', { timeout: 5000 }, async () => {

endToEndTests/test/queries/fastaAligned.json

@@ -17,7 +17,7 @@
     },
     {
       "gisaid_epi_isl": "EPI_ISL_1001920",
-      "testSecondSequence": "ACGT"
+      "testSecondSequence": "ARGT"
     },
     {
       "gisaid_epi_isl": "EPI_ISL_1002052",
@@ -57,7 +57,7 @@
     },
     {
       "gisaid_epi_isl": "EPI_ISL_1004495",
-      "testSecondSequence": "ACGT"
+      "testSecondSequence": "ARGT"
     },
     {
       "gisaid_epi_isl": "EPI_ISL_1005148",
@@ -89,7 +89,7 @@
     },
     {
       "gisaid_epi_isl": "EPI_ISL_1131102",
-      "testSecondSequence": "ACGT"
+      "testSecondSequence": "AYGT"
     },
     {
       "gisaid_epi_isl": "EPI_ISL_1195052",
@@ -205,7 +205,7 @@
     },
     {
       "gisaid_epi_isl": "EPI_ISL_2019235",
-      "testSecondSequence": "ACGT"
+      "testSecondSequence": "A-GT"
     },
     {
       "gisaid_epi_isl": "EPI_ISL_2019350",
@@ -301,7 +301,7 @@
     },
     {
       "gisaid_epi_isl": "EPI_ISL_2408472",
-      "testSecondSequence": "AGGT"
+      "testSecondSequence": "AAGT"
     },
     {
       "gisaid_epi_isl": "EPI_ISL_2544226",

endToEndTests/test/queries/secondSequenceHasMutation.json

@@ -12,7 +12,7 @@
   },
   "expectedQueryResult": [
     {
-      "count": 3
+      "count": 6
     }
   ]
 }

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolA.json

@@ -0,0 +1,19 @@
+{
+  "testCaseName": "Test sequence has symbol A at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "NucleotideEquals",
+      "position": 2,
+      "symbol": "A",
+      "sequenceName": "testSecondSequence"
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 2
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolC.json

@@ -0,0 +1,19 @@
+{
+  "testCaseName": "Test sequence has symbol C at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "NucleotideEquals",
+      "position": 2,
+      "symbol": "C",
+      "sequenceName": "testSecondSequence"
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 91
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactA.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol A at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "A",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 2
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactC.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol C at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "C",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 91
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactG.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol G at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "G",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 0
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactGAP.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol GAP at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "-",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 1
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactN.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol N at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "N",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 2
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactR.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol R at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "R",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 2
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactT.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol T at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "T",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 1
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolExactY.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has exactly symbol Y at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Exact",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "Y",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 1
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolG.json

@@ -0,0 +1,19 @@
+{
+  "testCaseName": "Test sequence has symbol G at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "NucleotideEquals",
+      "position": 2,
+      "symbol": "G",
+      "sequenceName": "testSecondSequence"
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 0
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolGAP.json

@@ -0,0 +1,19 @@
+{
+  "testCaseName": "Test sequence has symbol GAP at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "NucleotideEquals",
+      "position": 2,
+      "symbol": "-",
+      "sequenceName": "testSecondSequence"
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 1
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolMaybeA.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has maybe symbol A at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Maybe",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "A",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 6
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolMaybeC.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has maybe symbol C at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Maybe",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "C",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 94
+    }
+  ]
+}

endToEndTests/test/queries/symbolEquals/testSeqPos2SymbolMaybeG.json

@@ -0,0 +1,22 @@
+{
+  "testCaseName": "Test sequence has maybe symbol G at position 2",
+  "query": {
+    "action": {
+      "type": "Aggregated"
+    },
+    "filterExpression": {
+      "type": "Maybe",
+      "child": {
+        "type": "NucleotideEquals",
+        "position": 2,
+        "symbol": "G",
+        "sequenceName": "testSecondSequence"
+      }
+    }
+  },
+  "expectedQueryResult": [
+    {
+      "count": 4
+    }
+  ]
+}