Skip to content
Python CI/Planemo

Remove conda init #11

Sign in to view logs

Remove conda init

Remove conda init #11

Workflow file for this run

.github/workflows/planemo.yml at aaa7e6a
name: Python CI/Planemo
on: [push, pull_request]
jobs:
lint:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache Python packages
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-py${{ matrix.python-version }}
restore-keys: |
${{ runner.os }}-pip-py
- name: Install dependencies
run: pip install flake8 flake8-import-order planemo Pygments
- name: Check dependencies
run: planemo --version
- name: Lint with planemo & flake8
run: planemo lint
- name: Shed lint with planemo
run: planemo shed_lint --tools --ensure_metadata --urls --report_level warn --fail_level error --recursive .
test:
needs: [ lint ]
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache Python packages
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-py${{ matrix.python-version }}
restore-keys: |
${{ runner.os }}-pip-py
- name: Cache .planemo
uses: actions/cache@v4
with:
path: ~/.planemo
key: ${{ runner.os }}-planemo-py${{ matrix.python-version }}
restore-keys: |
${{ runner.os }}-planemo-py
- name: Install Planemo
run: pip install Planemo
- name: Check Planemo version
run: planemo --version
- name: Run tests
run: planemo test
deploy:
if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/') }}
needs: [ test ]
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11]
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Cache Python packages
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-py${{ matrix.python-version }}
restore-keys: |
${{ runner.os }}-pip-py
- name: Install dependencies
run: pip install flake8 flake8-import-order planemo Pygments
- name: Check dependencies
run: planemo --version
- name: Deploy
run: planemo shed_update --shed_target toolshed --shed_key_from_env ${{ secrets.SHED_KEY }} --force_repository_creation .